Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
- plastid 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0008g04700.t01 | Wine grape | nucleus | 77.95 | 73.88 |
| VIT_00s0179g00340.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 74.02 | 70.68 |
| CDX99552 | Canola | plastid | 69.29 | 69.84 |
| EES08219 | Sorghum | cytosol | 49.61 | 58.88 |
| HORVU1Hr1G035130.3 | Barley | nucleus | 77.17 | 57.31 |
| AT4G13570.2 | Thale cress | cytoskeleton, cytosol, nucleus | 55.12 | 56.45 |
| Zm00001d025335_P001 | Maize | cytosol | 58.27 | 51.75 |
| Zm00001d015078_P001 | Maize | endoplasmic reticulum, vacuole | 52.76 | 30.18 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | ProteinID:CCB59549 | ProteinID:CCB59549.1 | UniProt:F6HX79 | EMBL:FN596494 |
| GO:GO:0000786 | GO:GO:0000790 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 |
| GO:GO:0006139 | GO:GO:0006342 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0040029 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 |
| InterPro:Histone_H2A_C | InterPro:IPR009072 | PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 | PANTHER:PTHR23430 |
| PANTHER:PTHR23430:SF105 | SMART:SM00414 | SUPFAM:SSF47113 | SignalP:SignalP-noTM | UniParc:UPI000210A784 | ArrayExpress:VIT_09s0002g05770 |
| EnsemblPlantsGene:VIT_09s0002g05770 | EnsemblPlants:VIT_09s0002g05770.t01 | SEG:seg | : | : | : |
Description
Histone H2A [Source:UniProtKB/TrEMBL;Acc:F6HX79]
Coordinates
chr9:-:5563424..5564806
Molecular Weight (calculated)
13754.0 Da
IEP (calculated)
10.267
GRAVY (calculated)
0.219
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSLQLRVGG FFVVFLFLCC EASSSRILPF PVGRVHRLLK TRVSANGRVG ATAAVYTAAI LEYLTAEVLE LAGNASKDLK VKRITPRHLQ LAIRGDEELD
101: TLIKGTIAGG GVIPHIHKSL INKSSKE
101: TLIKGTIAGG GVIPHIHKSL INKSSKE
001: MSGKGAKGLI MGKPSGSDKD KDKKKPITRS SRAGLQFPVG RVHRLLKTRS TAHGRVGATA AVYTAAILEY LTAEVLELAG NASKDLKVKR ISPRHLQLAI
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SAKE
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SAKE
Arabidopsis Description
HTA9Probable histone H2A variant 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C944]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.