Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 1
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY62164 | Canola | nucleus | 73.02 | 73.6 |
| CDY61820 | Canola | nucleus | 74.6 | 69.63 |
| CDY47568 | Canola | nucleus | 74.6 | 69.63 |
| CDY40131 | Canola | nucleus | 74.6 | 69.63 |
| CDY62197 | Canola | nucleus | 74.6 | 69.63 |
| VIT_09s0002g05770.t01 | Wine grape | endoplasmic reticulum, extracellular | 69.84 | 69.29 |
| CDY57201 | Canola | nucleus | 66.67 | 68.85 |
| CDY21851 | Canola | nucleus | 73.02 | 68.66 |
| CDY07697 | Canola | mitochondrion | 68.25 | 64.18 |
| CDY14429 | Canola | plastid | 67.46 | 63.43 |
| CDX78246 | Canola | cytosol | 68.25 | 63.24 |
| CDY07535 | Canola | nucleus | 68.25 | 62.32 |
| CDX67603 | Canola | nucleus | 68.25 | 62.32 |
| EES08219 | Sorghum | cytosol | 46.03 | 54.21 |
| HORVU1Hr1G035130.3 | Barley | nucleus | 68.25 | 50.29 |
| AT4G13570.2 | Thale cress | cytoskeleton, cytosol, nucleus | 48.41 | 49.19 |
| Zm00001d025335_P001 | Maize | cytosol | 52.38 | 46.15 |
| CDY13216 | Canola | mitochondrion | 68.25 | 45.99 |
| CDX73471 | Canola | plastid | 68.25 | 41.35 |
| CDY21852 | Canola | nucleus | 63.49 | 38.84 |
| CDY22659 | Canola | nucleus, plastid | 40.48 | 35.42 |
| CDY23443 | Canola | mitochondrion | 31.75 | 33.33 |
| Zm00001d015078_P001 | Maize | endoplasmic reticulum, vacuole | 47.62 | 27.03 |
| CDY11491 | Canola | mitochondrion | 18.25 | 26.74 |
| CDY51246 | Canola | plastid | 30.95 | 17.73 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | GO:A0A078EEU7 | EnsemblPlants:CDX99552 | ProteinID:CDX99552 | ProteinID:CDX99552.1 |
| GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00107996001 |
| InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C | InterPro:IPR009072 | PFAM:PF00125 |
| PFAM:PF16211 | PRINTS:PR00620 | PANTHER:PTHR23430 | PANTHER:PTHR23430:SF105 | SMART:SM00414 | SUPFAM:SSF47113 |
| UniParc:UPI0004EBDB05 | SEG:seg | : | : | : | : |
Description
BnaC09g24400D
Coordinates
chrLK031911:+:839991..841321
Molecular Weight (calculated)
13663.7 Da
IEP (calculated)
9.957
GRAVY (calculated)
-0.021
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSDSEDLPS SLLLACFGFG TPKTSRSMFP VRRVHRLLKT RSTAHGRVGA TAAVYTAVIL EYLTAEVLEL AGNASKDLKV KRVSPKHLQL AIHGDEELDN
101: LIKGTIAGCG VIPHIHKSLI NKSAKE
101: LIKGTIAGCG VIPHIHKSLI NKSAKE
001: MSGKGAKGLI MGKPSGSDKD KDKKKPITRS SRAGLQFPVG RVHRLLKTRS TAHGRVGATA AVYTAAILEY LTAEVLELAG NASKDLKVKR ISPRHLQLAI
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SAKE
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SAKE
Arabidopsis Description
HTA9Probable histone H2A variant 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C944]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.