Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23443 | Canola | mitochondrion | 48.61 | 58.33 |
| CDY11491 | Canola | mitochondrion | 30.56 | 51.16 |
| CDY62164 | Canola | nucleus | 43.75 | 50.4 |
| CDY07697 | Canola | mitochondrion | 46.53 | 50.0 |
| CDY14429 | Canola | plastid | 46.53 | 50.0 |
| CDY21851 | Canola | nucleus | 46.53 | 50.0 |
| CDY57201 | Canola | nucleus | 41.67 | 49.18 |
| CDY62197 | Canola | nucleus | 45.83 | 48.89 |
| CDY61820 | Canola | nucleus | 45.83 | 48.89 |
| CDY47568 | Canola | nucleus | 45.83 | 48.89 |
| CDY40131 | Canola | nucleus | 45.83 | 48.89 |
| CDY07535 | Canola | nucleus | 45.14 | 47.1 |
| CDX67603 | Canola | nucleus | 45.14 | 47.1 |
| CDX78246 | Canola | cytosol | 44.44 | 47.06 |
| CDX99552 | Canola | plastid | 35.42 | 40.48 |
| CDY13216 | Canola | mitochondrion | 45.14 | 34.76 |
| CDX73471 | Canola | plastid | 45.14 | 31.25 |
| CDY21852 | Canola | nucleus | 43.06 | 30.1 |
| CDY51246 | Canola | plastid | 37.5 | 24.55 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | GO:A0A078GBD8 | UniProt:A0A078GBD8 | EnsemblPlants:CDY22659 | ProteinID:CDY22659 |
| ProteinID:CDY22659.1 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 |
| GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00019329001 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C |
| InterPro:Histone_H2A_CS | InterPro:IPR009072 | PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 | ScanProsite:PS00046 |
| PANTHER:PTHR23430 | PANTHER:PTHR23430:SF207 | SMART:SM00414 | SUPFAM:SSF47113 | UniParc:UPI0004EE4173 | SEG:seg |
Description
BnaC08g42930DHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A078GBD8]
Coordinates
chrLK032134:+:339359..340092
Molecular Weight (calculated)
14845.0 Da
IEP (calculated)
11.058
GRAVY (calculated)
-0.111
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKGAAASGT SKGGKGKGKA TKSVVSRSSK AGLQFPVGRI ARFLKAGKYA DRVGSGAPVY LAAVLEYLAA EVLEVAGNAA RHNKKTRIIP RHIQLAVRND
101: EELSNLLGSV TIASGGVLPH ILPNLLPAKV GKNKGDVGSA SQEF
101: EELSNLLGSV TIASGGVLPH ILPNLLPAKV GKNKGDVGSA SQEF
001: MSTGAGSGTT KGGRGKPKAT KSVSRSSKAG LQFPVGRIAR FLKSGKYAER VGAGAPVYLS AVLEYLAAEV LELAGNAARD NKKTRIVPRH IQLAVRNDEE
101: LSKLLGSVTI ANGGVLPNIH QTLLPSKVGK NKGDIGSASQ EF
101: LSKLLGSVTI ANGGVLPNIH QTLLPSKVGK NKGDIGSASQ EF
Arabidopsis Description
HTA5Histone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178W8H7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.