Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY62197 | Canola | nucleus | 93.28 | 92.59 |
| CDY47568 | Canola | nucleus | 93.28 | 92.59 |
| CDY61820 | Canola | nucleus | 92.54 | 91.85 |
| CDY40131 | Canola | nucleus | 92.54 | 91.85 |
| CDY62164 | Canola | nucleus | 85.07 | 91.2 |
| VIT_04s0008g04700.t01 | Wine grape | nucleus | 89.55 | 89.55 |
| KRH52500 | Soybean | nucleus | 89.55 | 88.24 |
| Solyc12g006830.1.1 | Tomato | nucleus | 88.06 | 87.41 |
| PGSC0003DMT400002745 | Potato | nucleus | 88.06 | 87.41 |
| GSMUA_Achr10P... | Banana | nucleus | 86.57 | 85.29 |
| CDX78246 | Canola | cytosol | 85.07 | 83.82 |
| CDY57201 | Canola | nucleus | 76.12 | 83.61 |
| CDY07697 | Canola | mitochondrion | 81.34 | 81.34 |
| CDX67603 | Canola | nucleus | 83.58 | 81.16 |
| CDY07535 | Canola | nucleus | 83.58 | 81.16 |
| CDY14429 | Canola | plastid | 80.6 | 80.6 |
| CDX99552 | Canola | plastid | 68.66 | 73.02 |
| CDY13216 | Canola | mitochondrion | 82.09 | 58.82 |
| CDY21852 | Canola | nucleus | 89.55 | 58.25 |
| CDX73471 | Canola | plastid | 85.07 | 54.81 |
| CDY22659 | Canola | nucleus, plastid | 50.0 | 46.53 |
| CDY23443 | Canola | mitochondrion | 39.55 | 44.17 |
| CDY11491 | Canola | mitochondrion | 26.87 | 41.86 |
| CDY51246 | Canola | plastid | 34.33 | 20.91 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | GO:A0A078G904 | UniProt:A0A078G904 | EnsemblPlants:CDY21851 | ProteinID:CDY21851 |
| ProteinID:CDY21851.1 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 |
| GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00018154001 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C |
| InterPro:Histone_H2A_CS | InterPro:IPR009072 | PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 | ScanProsite:PS00046 |
| PANTHER:PTHR23430 | PANTHER:PTHR23430:SF55 | SMART:SM00414 | SUPFAM:SSF47113 | UniParc:UPI0001BA81A3 | SEG:seg |
Description
BnaC01g35970DHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A078G904]
Coordinates
chrLK032125:-:308616..309624
Molecular Weight (calculated)
14233.4 Da
IEP (calculated)
10.974
GRAVY (calculated)
-0.404
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGKGAKGLI MGKSSGNDKD KDKKKPTTRS SRAGLQFPVG RVHRLLKGRS TAHGRVGATA AVYTAAILEY LTAEVLELAG NASKDLKVKR ITPRHLQLAI
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SGQE
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SGQE
001: MSGKGAKGLI MGKPSGSDKD KDKKKPITRS SRAGLQFPVG RVHRLLKTRS TAHGRVGATA AVYTAAILEY LTAEVLELAG NASKDLKVKR ISPRHLQLAI
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SAKE
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SAKE
Arabidopsis Description
HTA9Probable histone H2A variant 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C944]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.