CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g084430.2.1	Tomato	plasma membrane	26.36	59.79
HORVU3Hr1G068240.1	Barley	mitochondrion, nucleus, plastid	20.91	50.0
TraesCS3D01G539500.1	Wheat	cytosol, mitochondrion, nucleus	21.82	39.67
CDY23443	Canola	mitochondrion	20.45	37.5
CDY22659	Canola	nucleus, plastid	24.55	37.5
TraesCS6D01G040300.1	Wheat	nucleus	25.0	37.41
TraesCS6B01G049200.1	Wheat	nucleus	24.55	36.99
TraesCS6B01G049400.1	Wheat	nucleus	24.55	36.99
CDY57201	Canola	nucleus	20.45	36.89
TraesCS6B01G048700.1	Wheat	nucleus	24.55	36.73
TraesCS6A01G035200.1	Wheat	nucleus	24.55	36.73
TraesCS6A01G035100.1	Wheat	nucleus	24.09	36.3
TraesCS6B01G049000.1	Wheat	nucleus	24.09	36.3
TraesCS6B01G049500.1	Wheat	nucleus	24.09	36.3
TraesCS6B01G082400.1	Wheat	nucleus	24.09	36.3
TraesCS6B01G048300.1	Wheat	nucleus	24.09	36.05
CDY62164	Canola	nucleus	20.0	35.2
CDY62197	Canola	nucleus	21.36	34.81
CDY61820	Canola	nucleus	21.36	34.81
CDY47568	Canola	nucleus	21.36	34.81
CDY40131	Canola	nucleus	21.36	34.81
CDX78246	Canola	cytosol	21.36	34.56
CDY07697	Canola	mitochondrion	20.91	34.33
CDY21851	Canola	nucleus	20.91	34.33
CDY14429	Canola	plastid	20.91	34.33
CDY07535	Canola	nucleus	21.36	34.06
CDX67603	Canola	nucleus	21.36	34.06
TraesCS6A01G075400.1	Wheat	unclear	20.45	31.47
CDX99552	Canola	plastid	17.73	30.95
TraesCS6B01G100100.1	Wheat	nucleus	20.45	29.03
HORVU7Hr1G100400.1	Barley	nucleus	25.0	27.36
TraesCS3D01G521700.1	Wheat	nucleus	21.36	26.7
HORVU6Hr1G006120.1	Barley	nucleus	24.55	25.96
CDY13216	Canola	mitochondrion	21.82	25.67
HORVU6Hr1G006080.1	Barley	nucleus, plastid	23.64	25.37
CDY21852	Canola	nucleus	21.82	23.3
CDX73471	Canola	plastid	21.36	22.6
CDY11491	Canola	mitochondrion	5.45	13.95

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.2	GO:A0A078IMN5	UniProt:A0A078IMN5	EnsemblPlants:CDY51246	ProteinID:CDY51246
ProteinID:CDY51246.1	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00003008001	InterPro:Histone-fold	InterPro:Histone_H2A	InterPro:Histone_H2A_C	InterPro:IPR009072
PFAM:PF16211	PRINTS:PR00620	PANTHER:PTHR23430	PANTHER:PTHR23430:SF195	SMART:SM00414	SUPFAM:SSF47113
UniParc:UPI0004EE55DE	SEG:seg	:	:	:	:

Description

BnaC03g77700DHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A078IMN5]

Coordinates

chrLK032978:+:11563..13122

Molecular Weight (calculated)

24856.1 Da

IEP (calculated)

9.180

GRAVY (calculated)

-0.109

Length

220 amino acids

Sequence
(BLAST)

001: MQTTSPSGTQ VLGIRRYATV VEAASSGRWN IPSGVKGTHR STKNEYRSVS QLVGYIEKQY ETVSHHFVIR TQFFTVCCCN DGLRSQIFTR LLCLLRLGRG
101: LKNVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG DVTIANGGVM PNIHNLLLPK KAGGSSKPSD DDDLLINQSC CSFQFCYSFQ LNVHMLQFLM
201: NSIFIRFFLV QCFWDFQLNC

Best Arabidopsis Sequence Match ( AT4G27230.1 )
(BLAST)

001: MAGRGKQLGS GAAKKSTSRS SKAGLQFPVG RIARFLKAGK YAERVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHNLLLPK KAGSSKPTEE D

Arabidopsis Description

HTA2Probable histone H2A.3 [Source:UniProtKB/Swiss-Prot;Acc:O81826]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.