Factsheet for TraesCS6A01G075400.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

mitochondrion 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G100100.1	Wheat	nucleus	83.92	77.42
TraesCS3D01G521700.1	Wheat	nucleus	94.41	76.7
TraesCS6A01G035100.1	Wheat	nucleus	71.33	69.86
TraesCS6A01G035200.1	Wheat	nucleus	69.93	68.03
TraesCS2A01G214700.1	Wheat	mitochondrion	55.24	58.52
TraesCS1A01G132400.1	Wheat	mitochondrion	47.55	48.92
Solyc06g084430.2.1	Tomato	plasma membrane	27.97	41.24
CDY51246	Canola	plastid	31.47	20.45

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.2	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2A_C	InterPro:Histone_H2A_CS
InterPro:IPR009072	PFAM:PF00125	PFAM:PF16211	PRINTS:PR00620	ScanProsite:PS00046	PANTHER:PTHR23430
PANTHER:PTHR23430:SF202	SMART:SM00414	SUPFAM:SSF47113	EnsemblPlantsGene:TraesCS6A01G075400	EnsemblPlants:TraesCS6A01G075400.1	TIGR:cd00074
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:45407575..45408125

Molecular Weight (calculated)

14924.5 Da

IEP (calculated)

11.250

GRAVY (calculated)

-0.110

Length

143 amino acids

Sequence
(BLAST)

001: MAGRKGVARK KAVTRSVRAG LQFPVGRIGR YLKKGRYAQR VGSGAPVYLA AVLEYLAAEV LELAGDAAKE TKKARIIPRH LMIAVQGDPE LSRLLAGVTI
101: AYGGVVPYIN SALLPKNGAG AAGKESKKKA AATKSPKKAA ATN

Best Arabidopsis Sequence Match ( AT1G51060.1 )
(BLAST)

001: MAGRGKTLGS GSAKKATTRS SKAGLQFPVG RIARFLKKGK YAERVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHNLLLPK KTGASKPSAE DD

Arabidopsis Description

HTA10Probable histone H2A.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C681]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.