Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G048300.1 | Wheat | nucleus | 99.32 | 99.32 |
| TraesCS6B01G048700.1 | Wheat | nucleus | 98.64 | 98.64 |
| TraesCS6D01G040300.1 | Wheat | nucleus | 98.64 | 98.64 |
| TraesCS6B01G049500.1 | Wheat | nucleus | 96.6 | 97.26 |
| TraesCS6A01G035100.1 | Wheat | nucleus | 95.92 | 96.58 |
| TraesCS6B01G049000.1 | Wheat | nucleus | 95.92 | 96.58 |
| TraesCS6B01G049200.1 | Wheat | nucleus | 95.92 | 96.58 |
| TraesCS6B01G049400.1 | Wheat | nucleus | 95.92 | 96.58 |
| TraesCS6B01G082400.1 | Wheat | nucleus | 95.92 | 96.58 |
| HORVU6Hr1G005940.1 | Barley | nucleus | 91.84 | 74.59 |
| TraesCS6A01G075400.1 | Wheat | unclear | 68.03 | 69.93 |
| TraesCS2A01G214700.1 | Wheat | mitochondrion | 62.59 | 68.15 |
| TraesCS1A01G132400.1 | Wheat | mitochondrion | 48.98 | 51.8 |
| Solyc06g084430.2.1 | Tomato | plasma membrane | 33.33 | 50.52 |
| CDY51246 | Canola | plastid | 36.73 | 24.55 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C | InterPro:Histone_H2A_CS |
| InterPro:IPR009072 | PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 | ScanProsite:PS00046 | PANTHER:PTHR23430 |
| PANTHER:PTHR23430:SF192 | SMART:SM00414 | SUPFAM:SSF47113 | EnsemblPlantsGene:TraesCS6A01G035200 | EnsemblPlants:TraesCS6A01G035200.1 | TIGR:cd00074 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:16801481..16802021
Molecular Weight (calculated)
15676.4 Da
IEP (calculated)
11.294
GRAVY (calculated)
-0.418
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGRKGGDRK KAVTRSVKAG LQFPVGRIGR YLKKGRYAQR VGSGAPVYLA AVLEYLAAEV LELAGNAAKD NKKTRIIPRH LLLAVRNDQE LGKLLAGVTI
101: AHGGVIPNIN SVLLPKKSPA AAEKEAKSPK KKTTTKSPKK KTAATKE
101: AHGGVIPNIN SVLLPKKSPA AAEKEAKSPK KKTTTKSPKK KTAATKE
001: MAGRGKTLGS GSAKKATTRS SKAGLQFPVG RIARFLKKGK YAERVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHNLLLPK KTGASKPSAE DD
101: DVTIANGGVM PNIHNLLLPK KTGASKPSAE DD
Arabidopsis Description
HTA10Probable histone H2A.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C681]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.