Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
- nucleus 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G068240.1 | Barley | mitochondrion, nucleus, plastid | 48.45 | 51.09 |
| TraesCS3D01G539500.1 | Wheat | cytosol, mitochondrion, nucleus | 45.36 | 36.36 |
| TraesCS6B01G049400.1 | Wheat | nucleus | 50.52 | 33.56 |
| TraesCS6B01G049200.1 | Wheat | nucleus | 50.52 | 33.56 |
| TraesCS6D01G040300.1 | Wheat | nucleus | 50.52 | 33.33 |
| TraesCS6B01G048700.1 | Wheat | nucleus | 50.52 | 33.33 |
| TraesCS6A01G035200.1 | Wheat | nucleus | 50.52 | 33.33 |
| Solyc05g014870.1.1 | Tomato | nucleus | 36.08 | 33.33 |
| TraesCS6B01G082400.1 | Wheat | nucleus | 49.48 | 32.88 |
| TraesCS6B01G049500.1 | Wheat | nucleus | 49.48 | 32.88 |
| TraesCS6B01G049000.1 | Wheat | nucleus | 49.48 | 32.88 |
| TraesCS6A01G035100.1 | Wheat | nucleus | 49.48 | 32.88 |
| TraesCS6B01G048300.1 | Wheat | nucleus | 49.48 | 32.65 |
| Solyc05g014800.1.1 | Tomato | nucleus | 42.27 | 30.37 |
| Solyc05g014890.1.1 | Tomato | mitochondrion | 40.21 | 28.89 |
| TraesCS6A01G075400.1 | Wheat | unclear | 41.24 | 27.97 |
| Solyc05g014880.1.1 | Tomato | nucleus | 24.74 | 27.27 |
| Solyc12g006830.1.1 | Tomato | nucleus | 37.11 | 26.67 |
| CDY51246 | Canola | plastid | 59.79 | 26.36 |
| Solyc05g014860.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 35.05 | 25.95 |
| TraesCS6B01G100100.1 | Wheat | nucleus | 41.24 | 25.81 |
| HORVU7Hr1G100400.1 | Barley | nucleus | 49.48 | 23.88 |
| HORVU6Hr1G006080.1 | Barley | nucleus, plastid | 49.48 | 23.41 |
| TraesCS3D01G521700.1 | Wheat | nucleus | 42.27 | 23.3 |
| Solyc05g014850.1.1 | Tomato | cytosol, nucleus, peroxisome, plastid | 40.21 | 22.29 |
| HORVU6Hr1G006120.1 | Barley | nucleus | 47.42 | 22.12 |
| Solyc05g014940.1.1 | Tomato | nucleus | 31.96 | 21.68 |
| Solyc06g084090.2.1 | Tomato | nucleus | 37.11 | 17.73 |
| Solyc05g014810.1.1 | Tomato | mitochondrion | 26.8 | 17.22 |
| Solyc05g014830.1.1 | Tomato | nucleus | 43.3 | 14.38 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | GO:GO:0000786 | GO:GO:0000790 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005694 | GO:GO:0006139 | GO:GO:0006342 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0040029 |
| GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A_C | InterPro:IPR009072 | UniProt:K4CAU8 |
| PFAM:PF16211 | PRINTS:PR00620 | PANTHER:PTHR23430 | PANTHER:PTHR23430:SF207 | SMART:SM00414 | SUPFAM:SSF47113 |
| EnsemblPlantsGene:Solyc06g084430.2 | EnsemblPlants:Solyc06g084430.2.1 | TMHMM:TMhelix | UniParc:UPI000276B9C9 | SEG:seg | : |
Description
Histone H2A [Source:UniProtKB/TrEMBL;Acc:K4CAU8]
Coordinates
chr6:+:49544039..49544745
Molecular Weight (calculated)
10620.2 Da
IEP (calculated)
10.896
GRAVY (calculated)
0.155
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MLSVLALVHL SISLLFLNIL LLRFVLELAG NAARDNKKNR IIPRHIQLAV RNDEELSKLL GSVTIANGGV LPNIHSNLLP KKNGKGKVES ASQSQEF
001: MSTGAGSGTT KGGRGKPKAT KSVSRSSKAG LQFPVGRIAR FLKSGKYAER VGAGAPVYLS AVLEYLAAEV LELAGNAARD NKKTRIVPRH IQLAVRNDEE
101: LSKLLGSVTI ANGGVLPNIH QTLLPSKVGK NKGDIGSASQ EF
101: LSKLLGSVTI ANGGVLPNIH QTLLPSKVGK NKGDIGSASQ EF
Arabidopsis Description
HTA5Histone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178W8H7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.