Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
- mitochondrion 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g014800.1.1 | Tomato | nucleus | 61.71 | 80.0 |
| Solyc05g014890.1.1 | Tomato | mitochondrion | 57.71 | 74.81 |
| Solyc05g014880.1.1 | Tomato | nucleus | 36.57 | 72.73 |
| Solyc05g014860.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 54.29 | 72.52 |
| Solyc05g014870.1.1 | Tomato | nucleus | 37.14 | 61.9 |
| PGSC0003DMT400090970 | Potato | nucleus | 46.29 | 60.45 |
| HORVU2Hr1G043840.1 | Barley | mitochondrion | 24.0 | 58.33 |
| HORVU2Hr1G043860.1 | Barley | nucleus | 41.71 | 54.07 |
| TraesCS2B01G239700.1 | Wheat | mitochondrion | 41.71 | 54.07 |
| TraesCS2A01G214700.1 | Wheat | mitochondrion | 41.71 | 54.07 |
| KRH27119 | Soybean | nucleus | 41.14 | 53.33 |
| Solyc05g014810.1.1 | Tomato | mitochondrion | 42.86 | 49.67 |
| Solyc05g014940.1.1 | Tomato | nucleus | 38.29 | 46.85 |
| Bra029498.1-P | Field mustard | mitochondrion | 32.0 | 46.67 |
| CDY23443 | Canola | mitochondrion | 31.43 | 45.83 |
| GSMUA_Achr2P01530_001 | Banana | endoplasmic reticulum, plasma membrane | 27.43 | 45.28 |
| Solyc12g006830.1.1 | Tomato | nucleus | 33.71 | 43.7 |
| CDY11491 | Canola | mitochondrion | 21.14 | 43.02 |
| Solyc06g084430.2.1 | Tomato | plasma membrane | 22.29 | 40.21 |
| Solyc05g014830.1.1 | Tomato | nucleus | 55.43 | 33.22 |
| Solyc06g084090.2.1 | Tomato | nucleus | 33.14 | 28.57 |
| HORVU6Hr1G003750.1 | Barley | nucleus | 19.43 | 26.56 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | GO:GO:0000786 | GO:GO:0000790 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005694 | GO:GO:0006139 | GO:GO:0006342 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0040029 | GO:GO:0046982 | InterPro:Histone-fold |
| InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C | InterPro:IPR009072 | UniProt:K4BYK3 | PFAM:PF00125 |
| PFAM:PF16211 | PRINTS:PR00620 | PANTHER:PTHR23430 | PANTHER:PTHR23430:SF141 | SMART:SM00414 | SUPFAM:SSF47113 |
| EnsemblPlantsGene:Solyc05g014850.1 | EnsemblPlants:Solyc05g014850.1.1 | UniParc:UPI00027666C7 | SEG:seg | : | : |
Description
Histone H2A [Source:UniProtKB/TrEMBL;Acc:K4BYK3]
Coordinates
chr5:-:9058071..9058895
Molecular Weight (calculated)
19174.4 Da
IEP (calculated)
10.842
GRAVY (calculated)
-0.108
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTSLSTVDF LFNPTAYKSN PRDHFLIGWV ITPGGGIVGK GKNLGSNAKR RSRSSKACLK FPVPRIARFL KDGKYAKRVG AGAPVFLAAV LEYLVVEVNF
101: SMLELGGIAA RNDKKTSISP RHIQLAIRFD KDLYQFLRVV TIPNGGVIPK IHKILLPNNK SNTSKAVVAA HEEED
101: SMLELGGIAA RNDKKTSISP RHIQLAIRFD KDLYQFLRVV TIPNGGVIPK IHKILLPNNK SNTSKAVVAA HEEED
001: MAGRGKTLGS GSAKKATTRS SKAGLQFPVG RIARFLKKGK YAERVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHNLLLPK KTGASKPSAE DD
101: DVTIANGGVM PNIHNLLLPK KTGASKPSAE DD
Arabidopsis Description
HTA10Probable histone H2A.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C681]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.