Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 4
- mitochondrion 5
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
27142171
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G239700.1 | Wheat | mitochondrion | 99.26 | 99.26 |
| TraesCS2A01G214700.1 | Wheat | mitochondrion | 98.52 | 98.52 |
| HORVU2Hr1G043840.1 | Barley | mitochondrion | 46.67 | 87.5 |
| KRH27119 | Soybean | nucleus | 85.19 | 85.19 |
| Bra029498.1-P | Field mustard | mitochondrion | 62.22 | 70.0 |
| CDY23443 | Canola | mitochondrion | 61.48 | 69.17 |
| Solyc05g014880.1.1 | Tomato | nucleus | 44.44 | 68.18 |
| CDY11491 | Canola | mitochondrion | 40.0 | 62.79 |
| PGSC0003DMT400089480 | Potato | nucleus | 62.96 | 62.5 |
| Solyc05g014800.1.1 | Tomato | nucleus | 58.52 | 58.52 |
| PGSC0003DMT400094846 | Potato | mitochondrion, nucleus | 58.52 | 58.09 |
| PGSC0003DMT400091186 | Potato | mitochondrion | 58.52 | 58.09 |
| GSMUA_Achr2P01530_001 | Banana | endoplasmic reticulum, plasma membrane | 45.19 | 57.55 |
| Solyc05g014890.1.1 | Tomato | mitochondrion | 55.56 | 55.56 |
| PGSC0003DMT400095704 | Potato | mitochondrion | 56.3 | 55.47 |
| Solyc05g014870.1.1 | Tomato | nucleus | 40.74 | 52.38 |
| PGSC0003DMT400087364 | Potato | mitochondrion | 52.59 | 52.21 |
| Solyc05g014860.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 50.37 | 51.91 |
| HORVU6Hr1G005940.1 | Barley | nucleus | 66.67 | 49.72 |
| PGSC0003DMT400094421 | Potato | endoplasmic reticulum, mitochondrion | 46.67 | 49.22 |
| HORVU3Hr1G068240.1 | Barley | mitochondrion, nucleus, plastid | 32.59 | 47.83 |
| PGSC0003DMT400090970 | Potato | nucleus | 47.41 | 47.76 |
| PGSC0003DMT400088887 | Potato | endoplasmic reticulum, extracellular | 41.48 | 47.06 |
| PGSC0003DMT400094311 | Potato | extracellular | 38.52 | 44.83 |
| PGSC0003DMT400086553 | Potato | endoplasmic reticulum, extracellular | 39.26 | 42.74 |
| Solyc05g014850.1.1 | Tomato | cytosol, nucleus, peroxisome, plastid | 54.07 | 41.71 |
| Solyc05g014940.1.1 | Tomato | nucleus | 42.22 | 39.86 |
| Solyc05g014810.1.1 | Tomato | mitochondrion | 44.44 | 39.74 |
| HORVU1Hr1G035130.3 | Barley | nucleus | 48.15 | 38.01 |
| HORVU6Hr1G003750.1 | Barley | nucleus | 34.81 | 36.72 |
| HORVU7Hr1G100400.1 | Barley | nucleus | 42.22 | 28.36 |
| HORVU6Hr1G006080.1 | Barley | nucleus, plastid | 40.74 | 26.83 |
| HORVU6Hr1G006120.1 | Barley | nucleus | 40.0 | 25.96 |
| Solyc05g014830.1.1 | Tomato | nucleus | 51.11 | 23.63 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | EMBL:AK358813 | UniProt:F2D4K3 | GO:GO:0000786 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0046982 | EnsemblPlantsGene:HORVU2Hr1G043860 | EnsemblPlants:HORVU2Hr1G043860.1 |
| InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C | InterPro:Histone_H2A_CS | InterPro:IPR009072 |
| PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 | ScanProsite:PS00046 | PANTHER:PTHR23430 | PANTHER:PTHR23430:SF95 |
| SMART:SM00414 | SUPFAM:SSF47113 | UniParc:UPI0001B63D94 | SEG:seg | : | : |
Description
Histone H2A [Source:UniProtKB/TrEMBL;Acc:F2D4K3]
Coordinates
chrchr2H:+:225944289..225945458
Molecular Weight (calculated)
14103.1 Da
IEP (calculated)
10.719
GRAVY (calculated)
-0.186
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGRGKAIGA GAVKKATSRS SKAGLQFPVG RIARFLKAGK YAERVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELTKLLG
101: GATIASGGVM PNIHQHLLPK KASSSKASTV DDDDN
101: GATIASGGVM PNIHQHLLPK KASSSKASTV DDDDN
001: MAGRGKQLGS GAAKKSTSRS SKAGLQFPVG RIARFLKAGK YAERVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHNLLLPK KAGSSKPTEE D
101: DVTIANGGVM PNIHNLLLPK KAGSSKPTEE D
Arabidopsis Description
HTA2Probable histone H2A.3 [Source:UniProtKB/Swiss-Prot;Acc:O81826]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.