Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g084430.2.1 | Tomato | plasma membrane | 51.09 | 48.45 |
| HORVU6Hr1G005940.1 | Barley | nucleus | 78.26 | 39.78 |
| HORVU7Hr1G100400.1 | Barley | nucleus | 79.35 | 36.32 |
| HORVU6Hr1G006080.1 | Barley | nucleus, plastid | 78.26 | 35.12 |
| HORVU2Hr1G043860.1 | Barley | nucleus | 47.83 | 32.59 |
| HORVU6Hr1G006120.1 | Barley | nucleus | 61.96 | 27.4 |
| HORVU1Hr1G035130.3 | Barley | nucleus | 40.22 | 21.64 |
| CDY51246 | Canola | plastid | 50.0 | 20.91 |
| HORVU2Hr1G043840.1 | Barley | mitochondrion | 3.26 | 4.17 |
| HORVU6Hr1G003750.1 | Barley | nucleus | 2.17 | 1.56 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | UniProt:A0A287LH95 | ncoils:Coil | GO:GO:0000786 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0046982 | EnsemblPlantsGene:HORVU3Hr1G068240 | EnsemblPlants:HORVU3Hr1G068240.1 |
| InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A_C | InterPro:IPR009072 | PFAM:PF16211 | PRINTS:PR00620 |
| PANTHER:PTHR23430 | PANTHER:PTHR23430:SF193 | SMART:SM00414 | SUPFAM:SSF47113 | UniParc:UPI000B4796ED | SEG:seg |
Description
Histone H2A [Source:UniProtKB/TrEMBL;Acc:A0A287LH95]
Coordinates
chrchr3H:+:517928521..517928925
Molecular Weight (calculated)
9938.5 Da
IEP (calculated)
11.123
GRAVY (calculated)
-0.401
Length
92 amino acids
Sequence
(BLAST)
(BLAST)
1: LLLKSQLLEL AGNAAKDNKK TRIIPRHLLL AVRNDQELGR LLVGVTIAQG GVIPNINSVL LPKKSPAAAE KEAKLPKKKA DTKSPKKKAT KE
001: MESTGKVKKA FGGRKPPGAP KTKSVSKSMK AGLQFPVGRI TRFLKKGRYA QRLGGGAPVY MAAVLEYLAA EVLELAGNAA RDNKKSRIIP RHLLLAIRND
101: EELGKLLSGV TIAHGGVLPN INSVLLPKKS ATKPAEEKAT KSPVKSPKKA
101: EELGKLLSGV TIAHGGVLPN INSVLLPKKS ATKPAEEKAT KSPVKSPKKA
Arabidopsis Description
HTA6Probable histone H2A.7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJE8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.