Factsheet for HORVU6Hr1G003750.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G043840.1	Barley	mitochondrion	36.72	65.28
CDY11491	Canola	mitochondrion	32.03	47.67
Solyc05g014880.1.1	Tomato	nucleus	27.34	39.77
CDY23443	Canola	mitochondrion	33.59	35.83
Bra029498.1-P	Field mustard	mitochondrion	32.81	35.0
HORVU2Hr1G043860.1	Barley	nucleus	36.72	34.81
KRH27119	Soybean	nucleus	35.16	33.33
HORVU6Hr1G005940.1	Barley	nucleus	45.31	32.04
PGSC0003DMT400089480	Potato	nucleus	32.03	30.15
PGSC0003DMT400091186	Potato	mitochondrion	29.69	27.94
Solyc05g014800.1.1	Tomato	nucleus	28.91	27.41
PGSC0003DMT400094846	Potato	mitochondrion, nucleus	28.91	27.21
PGSC0003DMT400095704	Potato	mitochondrion	28.12	26.28
PGSC0003DMT400087364	Potato	mitochondrion	27.34	25.74
PGSC0003DMT400090970	Potato	nucleus	25.78	24.63
Solyc05g014860.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	25.0	24.43
Solyc05g014890.1.1	Tomato	mitochondrion	24.22	22.96
Solyc05g014810.1.1	Tomato	mitochondrion	24.22	20.53
PGSC0003DMT400094421	Potato	endoplasmic reticulum, mitochondrion	19.53	19.53
Solyc05g014850.1.1	Tomato	cytosol, nucleus, peroxisome, plastid	26.56	19.43
HORVU1Hr1G035130.3	Barley	nucleus	25.78	19.3
Solyc05g014940.1.1	Tomato	nucleus	20.31	18.18
GSMUA_Achr2P01530_001	Banana	endoplasmic reticulum, plasma membrane	14.84	17.92
PGSC0003DMT400088887	Potato	endoplasmic reticulum, extracellular	15.62	16.81
PGSC0003DMT400094311	Potato	extracellular	14.06	15.52
PGSC0003DMT400086553	Potato	endoplasmic reticulum, extracellular	14.84	15.32
Solyc05g014870.1.1	Tomato	nucleus	10.94	13.33
Solyc05g014830.1.1	Tomato	nucleus	25.78	11.3
HORVU6Hr1G006080.1	Barley	nucleus, plastid	12.5	7.8
HORVU6Hr1G006120.1	Barley	nucleus	12.5	7.69
HORVU7Hr1G100400.1	Barley	nucleus	11.72	7.46
HORVU3Hr1G068240.1	Barley	mitochondrion, nucleus, plastid	1.56	2.17

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.2	UniProt:A0A287T688	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	EnsemblPlantsGene:HORVU6Hr1G003750	EnsemblPlants:HORVU6Hr1G003750.1	InterPro:Histone-fold
InterPro:Histone_H2A	InterPro:Histone_H2A_CS	InterPro:IPR009072	PRINTS:PR00620	ScanProsite:PS00046	PANTHER:PTHR23430
PANTHER:PTHR23430:SF202	SMART:SM00414	SUPFAM:SSF47113	UniParc:UPI000B4638D4	SEG:seg	:

Description

Histone H2A [Source:UniProtKB/TrEMBL;Acc:A0A287T688]

Coordinates

chrchr6H:-:8200592..8201078

Molecular Weight (calculated)

10370.7 Da

IEP (calculated)

10.444

GRAVY (calculated)

-0.141

Length

128 amino acids

Sequence
(BLAST)

001: AAMAGRKGGE RKKAVARSVK AGLQFPVGRI GRYLKKGRYA QRVGSGAPVY LAAVLEYLAA EVTXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXYFR
101: IDYYTVKGAL KAYGHLYDKL EFIENGVH

Best Arabidopsis Sequence Match ( AT5G27670.1 )
(BLAST)

001: MESSQATTKP TRGAGGRKGG DRKKSVSKSV KAGLQFPVGR IARYLKKGRY ALRYGSGAPV YLAAVLEYLA AEVLELAGNA ARDNKKNRIN PRHLCLAIRN
101: DEELGRLLHG VTIASGGVLP NINPVLLPKK STASSSQAEK ASATKSPKKA

Arabidopsis Description

HTA7Histone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178UFF2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.