Factsheet for GSMUA_Achr2P01530_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum

Predictor Summary:

plastid 1
nucleus 2
extracellular 4
golgi 4
plasma membrane 5
endoplasmic reticulum 5
vacuole 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27119	Soybean	nucleus	58.49	45.93
Solyc05g014880.1.1	Tomato	nucleus	37.74	45.45
TraesCS2B01G239700.1	Wheat	mitochondrion	57.55	45.19
TraesCS2A01G214700.1	Wheat	mitochondrion	57.55	45.19
HORVU2Hr1G043860.1	Barley	nucleus	57.55	45.19
PGSC0003DMT400089480	Potato	nucleus	49.06	38.24
Solyc05g014800.1.1	Tomato	nucleus	48.11	37.78
GSMUA_Achr10P...	Banana	nucleus	47.17	36.76
GSMUA_Achr8P26920_001	Banana	nucleus	46.23	36.57
PGSC0003DMT400095704	Potato	mitochondrion	47.17	36.5
Solyc05g014890.1.1	Tomato	mitochondrion	46.23	36.3
PGSC0003DMT400091186	Potato	mitochondrion	46.23	36.03
GSMUA_Achr1P04720_001	Banana	nucleus	45.28	35.82
GSMUA_Achr3P15210_001	Banana	nucleus	45.28	35.82
GSMUA_Achr8P04480_001	Banana	nucleus	45.28	35.82
GSMUA_Achr1P27260_001	Banana	nucleus	45.28	35.82
PGSC0003DMT400094421	Potato	endoplasmic reticulum, mitochondrion	42.45	35.16
HORVU2Hr1G043840.1	Barley	mitochondrion	23.58	34.72
PGSC0003DMT400094846	Potato	mitochondrion, nucleus	44.34	34.56
PGSC0003DMT400088887	Potato	endoplasmic reticulum, extracellular	38.68	34.45
PGSC0003DMT400087364	Potato	mitochondrion	43.4	33.82
Bra029498.1-P	Field mustard	mitochondrion	37.74	33.33
CDY23443	Canola	mitochondrion	37.74	33.33
PGSC0003DMT400090970	Potato	nucleus	41.51	32.84
PGSC0003DMT400094311	Potato	extracellular	35.85	32.76
Solyc05g014860.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	39.62	32.06
Solyc05g014870.1.1	Tomato	nucleus	31.13	31.43
PGSC0003DMT400086553	Potato	endoplasmic reticulum, extracellular	35.85	30.65
Solyc05g014850.1.1	Tomato	cytosol, nucleus, peroxisome, plastid	45.28	27.43
Solyc05g014810.1.1	Tomato	mitochondrion	38.68	27.15
Solyc05g014940.1.1	Tomato	nucleus	34.91	25.87
CDY11491	Canola	mitochondrion	20.75	25.58
GSMUA_Achr6P23340_001	Banana	mitochondrion	45.28	20.87
Solyc05g014830.1.1	Tomato	nucleus	47.17	17.12
HORVU6Hr1G003750.1	Barley	nucleus	17.92	14.84

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.2	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0016020	GO:GO:0016021	GO:GO:0046982	EnsemblPlantsGene:GSMUA_Achr2G01530_001	EnsemblPlants:GSMUA_Achr2P01530_001
EnsemblPlants:GSMUA_Achr2T01530_001	InterPro:Histone-fold	InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2A_C	InterPro:IPR009072
UniProt:M0S494	PFAM:PF00125	PFAM:PF16211	PRINTS:PR00620	PANTHER:PTHR23430	PANTHER:PTHR23430:SF197
SMART:SM00414	SUPFAM:SSF47113	TMHMM:TMhelix	UniParc:UPI00029527D2	SEG:seg	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G01530_001]

Coordinates

chr2:-:7370257..7372718

Molecular Weight (calculated)

11716.6 Da

IEP (calculated)

9.633

GRAVY (calculated)

0.266

Length

106 amino acids

Sequence
(BLAST)

001: MTKNTGPSRR TIIHTLLLLK LVAFCVNNLV GKYDDRVDAN ALIYLAAILE YLVAVVLELA GNAARDNKKN RIIPRHIQLA IRNDEELSKL LGTIMIASDG
101: VLPSIH

Best Arabidopsis Sequence Match ( AT1G54690.1 )
(BLAST)

001: MSSGAGSGTT KGGRGKPKAT KSVSRSSKAG LQFPVGRIAR FLKAGKYAER VGAGAPVYLS AVLEYLAAEV LELAGNAARD NKKTRIVPRH IQLAVRNDEE
101: LSKLLGSVTI ANGGVLPNIH QTLLPSKVGK NKGDIGSASQ EF

Arabidopsis Description

HTA3Probable histone H2AXb [Source:UniProtKB/Swiss-Prot;Acc:Q9S9K7]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.