Factsheet for PGSC0003DMT400091186

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400089480	Potato	nucleus	91.91	91.91
PGSC0003DMT400094846	Potato	mitochondrion, nucleus	88.24	88.24
PGSC0003DMT400095704	Potato	mitochondrion	82.35	81.75
Solyc05g014800.1.1	Tomato	nucleus	80.15	80.74
Solyc05g014890.1.1	Tomato	mitochondrion	72.79	73.33
PGSC0003DMT400087364	Potato	mitochondrion	72.79	72.79
Solyc05g014860.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	67.65	70.23
HORVU2Hr1G043840.1	Barley	mitochondrion	35.29	66.67
Solyc05g014870.1.1	Tomato	nucleus	50.74	65.71
PGSC0003DMT400090970	Potato	nucleus	63.24	64.18
PGSC0003DMT400094421	Potato	endoplasmic reticulum, mitochondrion	56.62	60.16
KRH27119	Soybean	nucleus	59.56	60.0
HORVU2Hr1G043860.1	Barley	nucleus	58.09	58.52
TraesCS2A01G214700.1	Wheat	mitochondrion	58.09	58.52
TraesCS2B01G239700.1	Wheat	mitochondrion	58.09	58.52
PGSC0003DMT400086553	Potato	endoplasmic reticulum, extracellular	50.74	55.65
PGSC0003DMT400088887	Potato	endoplasmic reticulum, extracellular	48.53	55.46
PGSC0003DMT400094311	Potato	extracellular	47.06	55.17
Bra029498.1-P	Field mustard	mitochondrion	47.79	54.17
CDY23443	Canola	mitochondrion	47.06	53.33
CDY11491	Canola	mitochondrion	32.35	51.16
GSMUA_Achr2P01530_001	Banana	endoplasmic reticulum, plasma membrane	36.03	46.23
PGSC0003DMT400051893	Potato	extracellular	44.85	44.53
PGSC0003DMT400002745	Potato	nucleus	44.12	44.44
PGSC0003DMT400049686	Potato	nucleus	44.85	43.88
HORVU6Hr1G003750.1	Barley	nucleus	27.94	29.69

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:102578715	MapMan:12.1.2	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3
InterPro:Histone_H2A_C	InterPro:IPR009072	UniProt:M1DM21	PFAM:PF00125	PFAM:PF16211	EnsemblPlantsGene:PGSC0003DMG400040757
PGSC:PGSC0003DMG400040757	EnsemblPlants:PGSC0003DMT400091186	PRINTS:PR00620	PANTHER:PTHR23430	PANTHER:PTHR23430:SF141	SMART:SM00414
SUPFAM:SSF47113	UniParc:UPI0002948CA0	RefSeq:XP_006341801.1	SEG:seg	:	:

Description

Histone H2A [Source:PGSC_GENE;Acc:PGSC0003DMG400040757]

Coordinates

chr5:-:12564106..12564612

Molecular Weight (calculated)

14818.2 Da

IEP (calculated)

10.695

GRAVY (calculated)

-0.036

Length

136 amino acids

Sequence
(BLAST)

001: MAGKGKNLGS NAKGRSRSSK AGLQFLVACI ARFLKIGKYA KRVGVVAPVF LAAVLEYLAV EVLELAGIAA RNDKKSQIIP RHIQLAIRFD KELNQFLRDV
101: TIPNGGVIPR IHNIFLPNNK SNTSKAVADV AHEEED

Best Arabidopsis Sequence Match ( AT1G51060.1 )
(BLAST)

001: MAGRGKTLGS GSAKKATTRS SKAGLQFPVG RIARFLKKGK YAERVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHNLLLPK KTGASKPSAE DD

Arabidopsis Description

HTA10Probable histone H2A.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C681]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.