Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- endoplasmic reticulum 3
- extracellular 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400088887 | Potato | endoplasmic reticulum, extracellular | 66.41 | 71.43 |
| PGSC0003DMT400094311 | Potato | extracellular | 64.06 | 70.69 |
| PGSC0003DMT400089480 | Potato | nucleus | 62.5 | 58.82 |
| PGSC0003DMT400091186 | Potato | mitochondrion | 60.16 | 56.62 |
| PGSC0003DMT400094846 | Potato | mitochondrion, nucleus | 59.38 | 55.88 |
| PGSC0003DMT400095704 | Potato | mitochondrion | 59.38 | 55.47 |
| PGSC0003DMT400086553 | Potato | endoplasmic reticulum, extracellular | 51.56 | 53.23 |
| PGSC0003DMT400087364 | Potato | mitochondrion | 56.25 | 52.94 |
| KRH27119 | Soybean | nucleus | 50.0 | 47.41 |
| TraesCS2B01G239700.1 | Wheat | mitochondrion | 49.22 | 46.67 |
| TraesCS2A01G214700.1 | Wheat | mitochondrion | 49.22 | 46.67 |
| HORVU2Hr1G043860.1 | Barley | nucleus | 49.22 | 46.67 |
| PGSC0003DMT400090970 | Potato | nucleus | 47.66 | 45.52 |
| GSMUA_Achr2P01530_001 | Banana | endoplasmic reticulum, plasma membrane | 35.16 | 42.45 |
| HORVU2Hr1G043840.1 | Barley | mitochondrion | 22.66 | 40.28 |
| Bra029498.1-P | Field mustard | mitochondrion | 36.72 | 39.17 |
| CDY23443 | Canola | mitochondrion | 35.94 | 38.33 |
| Solyc05g014810.1.1 | Tomato | mitochondrion | 43.75 | 37.09 |
| PGSC0003DMT400002745 | Potato | nucleus | 35.16 | 33.33 |
| PGSC0003DMT400051893 | Potato | extracellular | 35.16 | 32.85 |
| PGSC0003DMT400049686 | Potato | nucleus | 35.16 | 32.37 |
| CDY11491 | Canola | mitochondrion | 19.53 | 29.07 |
| HORVU6Hr1G003750.1 | Barley | nucleus | 19.53 | 19.53 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C |
| InterPro:IPR009072 | UniProt:M1DU42 | PFAM:PF00125 | PFAM:PF16211 | EnsemblPlantsGene:PGSC0003DMG400043992 | PGSC:PGSC0003DMG400043992 |
| EnsemblPlants:PGSC0003DMT400094421 | PRINTS:PR00620 | PANTHER:PTHR23430 | PANTHER:PTHR23430:SF141 | SMART:SM00414 | SUPFAM:SSF47113 |
| UniParc:UPI000294E572 | SEG:seg | : | : | : | : |
Description
Histone H2A [Source:PGSC_GENE;Acc:PGSC0003DMG400043992]
Coordinates
chr5:-:12600528..12601078
Molecular Weight (calculated)
14364.3 Da
IEP (calculated)
11.977
GRAVY (calculated)
0.358
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVARIAQFL KVGKYAKCVG VGAPVFLVAV LEYLATEVLE LAGIAARNDK KTRIIPRHIQ LAIRFDAKLC QFLRDMTILN GGVIPNIHNI FLPKRRIALQ
101: RPPLLFLRRG RRIRLIIPSL VSRCSPSP
101: RPPLLFLRRG RRIRLIIPSL VSRCSPSP
001: MAGRGKQLGS GAAKKSTSRS SKAGLQFPVG RIARFLKAGK YAERVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHNLLLPK KAGSSKPTEE D
101: DVTIANGGVM PNIHNLLLPK KAGSSKPTEE D
Arabidopsis Description
HTA2Probable histone H2A.3 [Source:UniProtKB/Swiss-Prot;Acc:O81826]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.