Factsheet for Bra029498.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23443	Canola	mitochondrion	99.17	99.17
HORVU2Hr1G043840.1	Barley	mitochondrion	44.17	73.61
CDY11491	Canola	mitochondrion	50.83	70.93
KRH27119	Soybean	nucleus	77.5	68.89
TraesCS2B01G239700.1	Wheat	mitochondrion	70.83	62.96
TraesCS2A01G214700.1	Wheat	mitochondrion	70.83	62.96
HORVU2Hr1G043860.1	Barley	nucleus	70.0	62.22
PGSC0003DMT400089480	Potato	nucleus	57.5	50.74
PGSC0003DMT400094846	Potato	mitochondrion, nucleus	54.17	47.79
PGSC0003DMT400091186	Potato	mitochondrion	54.17	47.79
Solyc05g014800.1.1	Tomato	nucleus	52.5	46.67
Solyc05g014880.1.1	Tomato	nucleus	34.17	46.59
Solyc05g014860.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	50.83	46.56
PGSC0003DMT400095704	Potato	mitochondrion	50.0	43.8
Solyc05g014890.1.1	Tomato	mitochondrion	48.33	42.96
PGSC0003DMT400090970	Potato	nucleus	46.67	41.79
PGSC0003DMT400087364	Potato	mitochondrion	45.83	40.44
Bra000097.1-P	Field mustard	mitochondrion	45.0	40.3
Bra018984.1-P	Field mustard	nucleus	42.5	37.78
Bra030365.1-P	Field mustard	nucleus	42.5	37.78
GSMUA_Achr2P01530_001	Banana	endoplasmic reticulum, plasma membrane	33.33	37.74
Bra003188.1-P	Field mustard	nucleus	43.33	37.68
Bra014808.1-P	Field mustard	mitochondrion	42.5	37.5
Bra007080.1-P	Field mustard	cytosol	42.5	37.5
Solyc05g014870.1.1	Tomato	nucleus	32.5	37.14
PGSC0003DMT400094421	Potato	endoplasmic reticulum, mitochondrion	39.17	36.72
PGSC0003DMT400088887	Potato	endoplasmic reticulum, extracellular	34.17	34.45
PGSC0003DMT400086553	Potato	endoplasmic reticulum, extracellular	35.0	33.87
HORVU6Hr1G003750.1	Barley	nucleus	35.0	32.81
PGSC0003DMT400094311	Potato	extracellular	31.67	32.76
Solyc05g014850.1.1	Tomato	cytosol, nucleus, peroxisome, plastid	46.67	32.0
Solyc05g014940.1.1	Tomato	nucleus	37.5	31.47
Solyc05g014810.1.1	Tomato	mitochondrion	33.33	26.49
Solyc05g014830.1.1	Tomato	nucleus	45.83	18.84

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.2	EnsemblPlantsGene:Bra029498	EnsemblPlants:Bra029498.1	EnsemblPlants:Bra029498.1-P	GO:GO:0000786
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold
InterPro:Histone_H2A	InterPro:Histone_H2A_C	InterPro:Histone_H2A_CS	InterPro:IPR009072	UniProt:M4EL31	PFAM:PF16211
ScanProsite:PS00046	PANTHER:PTHR23430	PANTHER:PTHR23430:SF195	SMART:SM00414	SUPFAM:SSF47113	UniParc:UPI0002542701
SEG:seg	:	:	:	:	:

Description

AT1G51060 (E=6e-018) HTA10 | HTA10; DNA binding

Coordinates

chrA09:+:17560645..17561813

Molecular Weight (calculated)

12780.5 Da

IEP (calculated)

10.260

GRAVY (calculated)

-0.276

Length

120 amino acids

Sequence
(BLAST)

001: MAGRGKTLGS RVAKKATSRS SKAGLQFPVG RIARFLKNCK YAFAGAPVYL AAVLEYLAAE GQQEDEMPRH IQLAVRNDEE LSKLLGDVTI ANGCVMPNIH
101: NLLLPKKAGG GASPRSGDDK

Best Arabidopsis Sequence Match ( AT1G51060.1 )
(BLAST)

001: MAGRGKTLGS GSAKKATTRS SKAGLQFPVG RIARFLKKGK YAERVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHNLLLPK KTGASKPSAE DD

Arabidopsis Description

HTA10Probable histone H2A.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C681]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.