Factsheet for Bra003188.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra034727.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54560.1	Bra034727.1-P	AT3G12810.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67603	Canola	nucleus	100.0	100.0
CDY07535	Canola	nucleus	100.0	100.0
AT3G54560.1	Thale cress	cytosol	97.1	98.53
Bra014808.1-P	Field mustard	mitochondrion	96.38	97.79
Bra007080.1-P	Field mustard	cytosol	92.75	94.12
VIT_00s0179g00340.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	88.41	91.73
KRH71352	Soybean	mitochondrion	89.13	90.44
KRH67280	Soybean	cytosol, mitochondrion, nucleus, plastid	89.13	90.44
KRH32088	Soybean	nucleus	89.13	90.44
KRG95601	Soybean	cytosol, mitochondrion, nucleus, plastid	89.13	90.44
Bra000097.1-P	Field mustard	mitochondrion	86.96	89.55
GSMUA_Achr1P04720_001	Banana	nucleus	86.96	89.55
Os10t0418000-01	Rice	nucleus	89.86	89.21
PGSC0003DMT400051893	Potato	extracellular	88.41	89.05
TraesCS7D01G246600.1	Wheat	mitochondrion	89.13	88.49
TraesCS1B01G154500.1	Wheat	mitochondrion	89.13	88.49
TraesCS1A01G132400.1	Wheat	mitochondrion	89.13	88.49
Zm00001d027760_P001	Maize	plastid	88.41	88.41
EES07107	Sorghum	mitochondrion	88.41	88.41
Os03t0162200-01	Rice	nucleus	88.41	88.41
GSMUA_Achr3P15210_001	Banana	nucleus	85.51	88.06
GSMUA_Achr1P27260_001	Banana	nucleus	85.51	88.06
GSMUA_Achr8P04480_001	Banana	nucleus	85.51	88.06
GSMUA_Achr8P26920_001	Banana	nucleus	85.51	88.06
PGSC0003DMT400049686	Potato	nucleus	86.23	85.61
Zm00001d033979_P001	Maize	mitochondrion, nucleus	84.78	85.4
Zm00001d013300_P001	Maize	mitochondrion, nucleus	84.78	85.4
Os03t0743400-01	Rice	nucleus	84.78	85.4
KXG28801	Sorghum	nucleus	80.43	83.46
Bra030365.1-P	Field mustard	nucleus	80.43	82.22
Bra018984.1-P	Field mustard	nucleus	80.43	82.22
KXG40126	Sorghum	nucleus	78.26	81.2
Zm00001d007567_P001	Maize	nucleus	72.46	75.76
Solyc06g084090.2.1	Tomato	nucleus	88.41	60.1
TraesCS2D01G571800.1	Wheat	mitochondrion, nucleus, plastid	48.55	55.83
Zm00001d007553_P001	Maize	nucleus	70.29	51.05
GSMUA_Achr6P23340_001	Banana	mitochondrion	84.78	50.87
Bra029498.1-P	Field mustard	mitochondrion	37.68	43.33

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.2	EnsemblPlantsGene:Bra003188	EnsemblPlants:Bra003188.1	EnsemblPlants:Bra003188.1-P	GO:GO:0000786
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold
InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2A_C	InterPro:IPR009072	UniProt:M4CG55	PFAM:PF00125
PFAM:PF16211	PRINTS:PR00620	PANTHER:PTHR23430	PANTHER:PTHR23430:SF211	SMART:SM00414	SUPFAM:SSF47113
UniParc:UPI0002541439	SEG:seg	:	:	:	:

Description

AT3G54560 (E=2e-055) HTA11 | HTA11; DNA binding

Coordinates

chrA07:+:11747527..11748595

Molecular Weight (calculated)

14789.1 Da

IEP (calculated)

10.955

GRAVY (calculated)

-0.405

Length

138 amino acids

Sequence
(BLAST)

001: MAGKGGKGLV AAKTMAANKD KDKDKDKKKP MSRSARAGIQ FPVGRIHRQL KTRVSAHGRV GATAAVYTAS ILEYLTAEVL ELAGNASKDL KVKRITPRHL
101: QLAIRGDEEL DTLIKGTIAG GGVIPHIHKS LINKTTNE

Best Arabidopsis Sequence Match ( AT3G54560.1 )
(BLAST)

001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE

Arabidopsis Description

H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.