Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d017660_P021 | |
| Zm00001d035012_P002 | |
| Zm00001d051507_P007 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54560.1 | Zm00001d035012_P002 | AT2G36740.1 | 17470967 |
| AT3G54560.1 | Zm00001d017660_P021 | AT3G12810.1 | 17470967 |
| AT3G54560.1 | Zm00001d051507_P007 | AT3G12810.1 | 17470967 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P04480_001 | Banana | nucleus | 75.0 | 73.88 |
| GSMUA_Achr3P15210_001 | Banana | nucleus | 75.0 | 73.88 |
| KXG28801 | Sorghum | nucleus | 74.24 | 73.68 |
| KRH67280 | Soybean | cytosol, mitochondrion, nucleus, plastid | 75.76 | 73.53 |
| KRG95601 | Soybean | cytosol, mitochondrion, nucleus, plastid | 75.76 | 73.53 |
| Zm00001d027760_P001 | Maize | plastid | 76.52 | 73.19 |
| GSMUA_Achr8P26920_001 | Banana | nucleus | 74.24 | 73.13 |
| GSMUA_Achr1P27260_001 | Banana | nucleus | 74.24 | 73.13 |
| VIT_00s0179g00340.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 73.48 | 72.93 |
| AT3G54560.1 | Thale cress | cytosol | 75.0 | 72.79 |
| Bra003188.1-P | Field mustard | nucleus | 75.76 | 72.46 |
| CDX67603 | Canola | nucleus | 75.76 | 72.46 |
| CDY07535 | Canola | nucleus | 75.76 | 72.46 |
| GSMUA_Achr1P04720_001 | Banana | nucleus | 73.48 | 72.39 |
| KRH32088 | Soybean | nucleus | 74.24 | 72.06 |
| KRH71352 | Soybean | mitochondrion | 74.24 | 72.06 |
| Bra014808.1-P | Field mustard | mitochondrion | 74.24 | 72.06 |
| Zm00001d013300_P001 | Maize | mitochondrion, nucleus | 74.24 | 71.53 |
| Zm00001d033979_P001 | Maize | mitochondrion, nucleus | 74.24 | 71.53 |
| CDX78246 | Canola | cytosol | 73.48 | 71.32 |
| Bra007080.1-P | Field mustard | cytosol | 73.48 | 71.32 |
| PGSC0003DMT400051893 | Potato | extracellular | 73.48 | 70.8 |
| CDY57201 | Canola | nucleus | 65.15 | 70.49 |
| PGSC0003DMT400049686 | Potato | nucleus | 73.48 | 69.78 |
| CDY14429 | Canola | plastid | 69.7 | 68.66 |
| Bra000097.1-P | Field mustard | mitochondrion | 69.7 | 68.66 |
| CDY07697 | Canola | mitochondrion | 69.7 | 68.66 |
| AT2G38810.3 | Thale cress | mitochondrion | 69.7 | 67.65 |
| Zm00001d007553_P001 | Maize | nucleus | 94.7 | 65.79 |
| Zm00001d009350_P001 | Maize | cytosol | 56.82 | 65.22 |
| Zm00001d027775_P001 | Maize | cytosol, extracellular, mitochondrion, nucleus | 56.06 | 63.79 |
| Zm00001d033146_P001 | Maize | cytosol | 55.3 | 62.93 |
| Zm00001d009769_P001 | Maize | cytosol, extracellular, nucleus | 54.55 | 62.07 |
| CDY13216 | Canola | mitochondrion | 74.24 | 52.41 |
| Solyc06g084090.2.1 | Tomato | nucleus | 73.48 | 47.78 |
| CDX73471 | Canola | plastid | 73.48 | 46.63 |
| Zm00001d025335_P001 | Maize | cytosol | 48.48 | 44.76 |
| GSMUA_Achr6P23340_001 | Banana | mitochondrion | 72.73 | 41.74 |
| Zm00001d052588_P001 | Maize | cytosol, nucleus, plastid | 58.33 | 39.09 |
| Zm00001d011011_P001 | Maize | cytosol, nucleus, peroxisome | 61.36 | 26.3 |
| Zm00001d015078_P001 | Maize | endoplasmic reticulum, vacuole | 41.67 | 24.77 |
| Zm00001d031574_P001 | Maize | endoplasmic reticulum | 50.76 | 17.27 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:100383617 | MapMan:12.1.2 | UniProt:B6SQ88 | EMBL:BT067823 | EMBL:EU954903 |
| EMBL:EU967709 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 |
| GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C | InterPro:Histone_H2A_CS |
| InterPro:IPR009072 | ProteinID:ONM27102.1 | PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 | ScanProsite:PS00046 |
| PANTHER:PTHR23430 | PANTHER:PTHR23430:SF105 | SMART:SM00414 | SUPFAM:SSF47113 | UniParc:UPI000182B87F | EnsemblPlantsGene:Zm00001d007567 |
| EnsemblPlants:Zm00001d007567_P001 | EnsemblPlants:Zm00001d007567_T001 | SEG:seg | : | : | : |
Description
Histone H2A
Coordinates
chr2:-:235018108..235019675
Molecular Weight (calculated)
13922.0 Da
IEP (calculated)
10.474
GRAVY (calculated)
-0.114
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKGGGKSL VAAKIAAGMD KDKKSPVNRS ARAGLHFPVG RIHRHLKDSA QAGERVGATA AVYAAAVLEY LTAEIMELAG NACRDLKVKR ITPRHLQLAV
101: RGDEELDTLI KATIAGGGVI PHIHRELIDK AA
101: RGDEELDTLI KATIAGGGVI PHIHRELIDK AA
001: MAGKGGKGLL AAKTTAAAAN KDSVKKKSIS RSSRAGIQFP VGRIHRQLKQ RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLV NKVTKD
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLV NKVTKD
Arabidopsis Description
HTA8Probable histone H2A variant 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SII0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.