Factsheet for Zm00001d052588_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009350_P001	Maize	cytosol	49.24	84.35
Zm00001d027775_P001	Maize	cytosol, extracellular, mitochondrion, nucleus	48.22	81.9
Zm00001d033146_P001	Maize	cytosol	48.22	81.9
Zm00001d009769_P001	Maize	cytosol, extracellular, nucleus	47.21	80.17
Zm00001d013300_P001	Maize	mitochondrion, nucleus	49.75	71.53
Zm00001d033979_P001	Maize	mitochondrion, nucleus	49.75	71.53
Zm00001d027760_P001	Maize	plastid	47.72	68.12
Zm00001d007567_P001	Maize	nucleus	39.09	58.33
HORVU1Hr1G035130.3	Barley	nucleus	49.75	57.31
Zm00001d025335_P001	Maize	cytosol	38.58	53.15
Zm00001d007553_P001	Maize	nucleus	41.12	42.63
Zm00001d011011_P001	Maize	cytosol, nucleus, peroxisome	50.25	32.14
Zm00001d015078_P001	Maize	endoplasmic reticulum, vacuole	35.53	31.53
Zm00001d031574_P001	Maize	endoplasmic reticulum	49.24	25.0

Protein Annotations

Gene3D:1.10.20.10	Gene3D:1.25.40.180	MapMan:12.1.2	UniProt:A0A1D6QHX6	ProteinID:AQK57467.1	InterPro:ARM-type_fold
GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0046982
InterPro:Histone-fold	InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2A_C	InterPro:IPR003891	InterPro:IPR009072
InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI	InterPro:MIF4-like_sf	PFAM:PF00125	PFAM:PF16211	PRINTS:PR00620
PFscan:PS51366	PANTHER:PTHR23430	PANTHER:PTHR23430:SF105	SMART:SM00414	SUPFAM:SSF47113	SUPFAM:SSF48371
UniParc:UPI0008425A72	EnsemblPlantsGene:Zm00001d052588	EnsemblPlants:Zm00001d052588_P001	EnsemblPlants:Zm00001d052588_T001	:	:

Description

Histone H2A

Coordinates

chr4:+:193813920..193814607

Molecular Weight (calculated)

21641.1 Da

IEP (calculated)

6.306

GRAVY (calculated)

-0.146

Length

197 amino acids

Sequence
(BLAST)

001: MHSSRALLLQ GFQHVLSTLE DAVTDAPKAT KFLGQIFARV VLEDEISLTE GGGLLQEWDG REEPAGQHAL EDNLASEDLG SMLESIRVER DKYSLMCFQF
101: PVGRIHRQLK QRTQANGRVG ATVAVYSAAI LEYLTAEVLE LAGNASKDLK VKRITPCHLQ LAIHGDEELY TLIKGTIVGG GIIPHIHKSL INKSSKE

Best Arabidopsis Sequence Match ( AT2G38810.2 )
(BLAST)

001: MAGKGGKGLL AAKTTAAAAN KDSVKKKSIS RSSRAGIQFP VGRIHRQLKQ RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLV NKVTKD

Arabidopsis Description

HTA8Probable histone H2A variant 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SII0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.