Factsheet for Zm00001d031574_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

endoplasmic reticulum 4
extracellular 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027775_P001	Maize	cytosol, extracellular, mitochondrion, nucleus	22.42	75.0
Zm00001d009350_P001	Maize	cytosol	21.91	73.91
Zm00001d009769_P001	Maize	cytosol, extracellular, nucleus	21.13	70.69
Zm00001d033146_P001	Maize	cytosol	21.13	70.69
Zm00001d013300_P001	Maize	mitochondrion, nucleus	23.45	66.42
Zm00001d033979_P001	Maize	mitochondrion, nucleus	23.45	66.42
Zm00001d027760_P001	Maize	plastid	21.39	60.14
Zm00001d007567_P001	Maize	nucleus	17.27	50.76
Zm00001d052588_P001	Maize	cytosol, nucleus, plastid	25.0	49.24
HORVU1Hr1G035130.3	Barley	nucleus	21.39	48.54
Zm00001d025335_P001	Maize	cytosol	16.49	44.76
Zm00001d011011_P001	Maize	cytosol, nucleus, peroxisome	28.87	36.36
Zm00001d007553_P001	Maize	nucleus	17.53	35.79
Zm00001d015078_P001	Maize	endoplasmic reticulum, vacuole	17.53	30.63

Protein Annotations

Gene3D:1.10.20.10	Gene3D:1.25.40.180	MapMan:12.1.2	UniProt:A0A1D6KJQ2	InterPro:ARM-type_fold	GO:GO:0000786
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A
InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2A_C	InterPro:IPR009072	InterPro:IPR016021	InterPro:MIF4-like_sf	ProteinID:ONM03159.1
PFAM:PF00125	PFAM:PF16211	PRINTS:PR00620	PANTHER:PTHR23253	PANTHER:PTHR23253:SF35	SMART:SM00414
SUPFAM:SSF47113	SUPFAM:SSF48371	UniParc:UPI000845278B	EnsemblPlantsGene:Zm00001d031574	EnsemblPlants:Zm00001d031574_P001	EnsemblPlants:Zm00001d031574_T001

Description

Histone H2A variant 1

Coordinates

chr1:-:195022397..195027607

Molecular Weight (calculated)

43616.8 Da

IEP (calculated)

6.891

GRAVY (calculated)

-0.145

Length

388 amino acids

Sequence
(BLAST)

001: MDKKLSEHFS AYDKLGFMLI ALIWEFDFFI VHDPDTISTS RQLEAKRDLV AGVVYGTDFF TKRKIQDSRG ILIGQIGCFD PFLAAYKVTL LSDFLLLCLV
101: TTYDSWNFCM QQTFNDRMHS KRLSMARTSF KMEHDLSKFG YFSRWRSLTK YSNHHGKERP ICKSQGLVDM NKPPEMISGN MKVGSANSFE RKDLERELLA
201: KLLVYLCTAQ EHLLSQRQLL QDAVTDAPKA TKFLGQIFAR VVLEDGISLT EGGGLLQEWD GREEPAGQHG LEDSLASEDL GSMLESIRVE RAKYSLMCFQ
301: FPVGRIHRQL KQMTQANGCV GATAAVYSVA ILEYLTVEVL ELAGNACKDL KLAICGDEEL DTLIKGTIVG GGVIPHIHKS LINKSSKE

Best Arabidopsis Sequence Match ( AT3G54560.1 )
(BLAST)

001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE

Arabidopsis Description

H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.