Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d017660_P021 | |
| Zm00001d035012_P002 | |
| Zm00001d051507_P007 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54560.1 | Zm00001d035012_P002 | AT2G36740.1 | 17470967 |
| AT3G54560.1 | Zm00001d017660_P021 | AT3G12810.1 | 17470967 |
| AT3G54560.1 | Zm00001d051507_P007 | AT3G12810.1 | 17470967 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d007567_P001 | Maize | nucleus | 65.79 | 94.7 |
| GSMUA_Achr8P04480_001 | Banana | nucleus | 52.11 | 73.88 |
| GSMUA_Achr3P15210_001 | Banana | nucleus | 52.11 | 73.88 |
| KXG28801 | Sorghum | nucleus | 51.58 | 73.68 |
| GSMUA_Achr8P26920_001 | Banana | nucleus | 51.58 | 73.13 |
| GSMUA_Achr1P27260_001 | Banana | nucleus | 51.58 | 73.13 |
| Zm00001d027760_P001 | Maize | plastid | 52.63 | 72.46 |
| GSMUA_Achr1P04720_001 | Banana | nucleus | 51.05 | 72.39 |
| KRH67280 | Soybean | cytosol, mitochondrion, nucleus, plastid | 51.58 | 72.06 |
| KRG95601 | Soybean | cytosol, mitochondrion, nucleus, plastid | 51.58 | 72.06 |
| AT3G54560.1 | Thale cress | cytosol | 51.05 | 71.32 |
| Zm00001d033979_P001 | Maize | mitochondrion, nucleus | 51.05 | 70.8 |
| Zm00001d013300_P001 | Maize | mitochondrion, nucleus | 51.05 | 70.8 |
| KRH32088 | Soybean | nucleus | 50.53 | 70.59 |
| KRH71352 | Soybean | mitochondrion | 50.53 | 70.59 |
| Bra007080.1-P | Field mustard | cytosol | 50.53 | 70.59 |
| Bra014808.1-P | Field mustard | mitochondrion | 50.53 | 70.59 |
| CDX78246 | Canola | cytosol | 50.53 | 70.59 |
| Bra003188.1-P | Field mustard | nucleus | 51.05 | 70.29 |
| CDY07535 | Canola | nucleus | 51.05 | 70.29 |
| CDX67603 | Canola | nucleus | 51.05 | 70.29 |
| VIT_00s0179g00340.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 48.95 | 69.92 |
| PGSC0003DMT400051893 | Potato | extracellular | 50.0 | 69.34 |
| CDY57201 | Canola | nucleus | 44.21 | 68.85 |
| PGSC0003DMT400049686 | Potato | nucleus | 50.0 | 68.35 |
| CDY14429 | Canola | plastid | 47.89 | 67.91 |
| Bra000097.1-P | Field mustard | mitochondrion | 47.89 | 67.91 |
| CDY07697 | Canola | mitochondrion | 47.89 | 67.91 |
| AT2G38810.3 | Thale cress | mitochondrion | 47.89 | 66.91 |
| Zm00001d009350_P001 | Maize | cytosol | 38.42 | 63.48 |
| Zm00001d027775_P001 | Maize | cytosol, extracellular, mitochondrion, nucleus | 37.89 | 62.07 |
| Zm00001d009769_P001 | Maize | cytosol, extracellular, nucleus | 37.37 | 61.21 |
| Zm00001d033146_P001 | Maize | cytosol | 37.37 | 61.21 |
| CDY13216 | Canola | mitochondrion | 52.63 | 53.48 |
| CDX73471 | Canola | plastid | 53.16 | 48.56 |
| Solyc06g084090.2.1 | Tomato | nucleus | 50.53 | 47.29 |
| Zm00001d025335_P001 | Maize | cytosol | 33.68 | 44.76 |
| GSMUA_Achr6P23340_001 | Banana | mitochondrion | 51.58 | 42.61 |
| Zm00001d052588_P001 | Maize | cytosol, nucleus, plastid | 42.63 | 41.12 |
| Zm00001d011011_P001 | Maize | cytosol, nucleus, peroxisome | 43.16 | 26.62 |
| Zm00001d015078_P001 | Maize | endoplasmic reticulum, vacuole | 29.47 | 25.23 |
| Zm00001d031574_P001 | Maize | endoplasmic reticulum | 35.79 | 17.53 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | UniProt:A0A1D6F770 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 |
| InterPro:Histone_H2A_C | InterPro:Histone_H2A_CS | InterPro:IPR009072 | ProteinID:ONM27086.1 | PFAM:PF00125 | PFAM:PF16211 |
| PRINTS:PR00620 | ScanProsite:PS00046 | PANTHER:PTHR23430 | PANTHER:PTHR23430:SF105 | SMART:SM00414 | SUPFAM:SSF47113 |
| UniParc:UPI0008446125 | EnsemblPlantsGene:Zm00001d007553 | EnsemblPlants:Zm00001d007553_P001 | EnsemblPlants:Zm00001d007553_T001 | SEG:seg | : |
Description
Probable histone H2A variant 3
Coordinates
chr2:-:234648305..234649496
Molecular Weight (calculated)
20465.1 Da
IEP (calculated)
11.882
GRAVY (calculated)
-0.407
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MHKNRTPPRV LSSFSPVSSY KPLPGRRKTP TPARTAPRKQ SLARRARIPR VAGRVRGSMA GKGGGKSLVA AKIAAGMDKD KKSPVNRSAR AGLHFPVERI
101: HRHLKDSAQA GERVGATAAV YAAAVLKYLT AEIMELAGNA CRDLKVKRIT PRHLQLAVRG DEELDTLIKA TIAGGGVIPH IHRELIDKAA
101: HRHLKDSAQA GERVGATAAV YAAAVLKYLT AEIMELAGNA CRDLKVKRIT PRHLQLAVRG DEELDTLIKA TIAGGGVIPH IHRELIDKAA
001: MAGKGGKGLL AAKTTAAAAN KDSVKKKSIS RSSRAGIQFP VGRIHRQLKQ RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLV NKVTKD
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLV NKVTKD
Arabidopsis Description
HTA8Probable histone H2A variant 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SII0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.