Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d033146_P001 | Maize | cytosol | 94.78 | 93.97 |
| Zm00001d009769_P001 | Maize | cytosol, extracellular, nucleus | 93.04 | 92.24 |
| Zm00001d027775_P001 | Maize | cytosol, extracellular, mitochondrion, nucleus | 92.17 | 91.38 |
| Zm00001d013300_P001 | Maize | mitochondrion, nucleus | 85.22 | 71.53 |
| Zm00001d033979_P001 | Maize | mitochondrion, nucleus | 85.22 | 71.53 |
| Zm00001d027760_P001 | Maize | plastid | 80.0 | 66.67 |
| Zm00001d007567_P001 | Maize | nucleus | 65.22 | 56.82 |
| HORVU1Hr1G035130.3 | Barley | nucleus | 79.13 | 53.22 |
| Zm00001d025335_P001 | Maize | cytosol | 62.61 | 50.35 |
| Zm00001d052588_P001 | Maize | cytosol, nucleus, plastid | 84.35 | 49.24 |
| Zm00001d007553_P001 | Maize | nucleus | 63.48 | 38.42 |
| Zm00001d011011_P001 | Maize | cytosol, nucleus, peroxisome | 80.87 | 30.19 |
| Zm00001d015078_P001 | Maize | endoplasmic reticulum, vacuole | 53.91 | 27.93 |
| Zm00001d031574_P001 | Maize | endoplasmic reticulum | 73.91 | 21.91 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | UniProt:A0A1D6FJ21 | ProteinID:AQK91758.1 | GO:GO:0000786 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A |
| InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C | InterPro:IPR009072 | PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 |
| PANTHER:PTHR23430 | PANTHER:PTHR23430:SF105 | SMART:SM00414 | SUPFAM:SSF47113 | UniParc:UPI000220C21B | EnsemblPlantsGene:Zm00001d009350 |
| EnsemblPlants:Zm00001d009350_P001 | EnsemblPlants:Zm00001d009350_T001 | : | : | : | : |
Description
Histone H2A variant 1
Coordinates
chr8:-:57956287..57956634
Molecular Weight (calculated)
12603.4 Da
IEP (calculated)
10.420
GRAVY (calculated)
-0.217
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MLESIKVERA KYSLMCFQFP VGRIHRQLKQ RTQANGRVGA TAAVYSAAIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL AIHGDELDTL TKGTIAGGGV
101: IPHIHKSPIN KSSKE
101: IPHIHKSPIN KSSKE
001: MAGKGGKGLL AAKTTAAAAN KDSVKKKSIS RSSRAGIQFP VGRIHRQLKQ RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLV NKVTKD
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLV NKVTKD
Arabidopsis Description
HTA8Probable histone H2A variant 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SII0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.