Factsheet for Zm00001d015078_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

endoplasmic reticulum 3
extracellular 2
vacuole 3
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027775_P001	Maize	cytosol, extracellular, mitochondrion, nucleus	29.28	56.03
Zm00001d009350_P001	Maize	cytosol	27.93	53.91
Zm00001d009769_P001	Maize	cytosol, extracellular, nucleus	27.93	53.45
VIT_09s0002g05770.t01	Wine grape	endoplasmic reticulum, extracellular	30.18	52.76
Zm00001d033146_P001	Maize	cytosol	27.03	51.72
Zm00001d033979_P001	Maize	mitochondrion, nucleus	31.53	51.09
Zm00001d013300_P001	Maize	mitochondrion, nucleus	31.53	51.09
Zm00001d027760_P001	Maize	plastid	31.08	50.0
CDX99552	Canola	plastid	27.03	47.62
EES08219	Sorghum	cytosol	22.52	46.73
Zm00001d025335_P001	Maize	cytosol	27.03	41.96
AT4G13570.2	Thale cress	cytoskeleton, cytosol, nucleus	23.42	41.94
Zm00001d007567_P001	Maize	nucleus	24.77	41.67
Zm00001d052588_P001	Maize	cytosol, nucleus, plastid	31.53	35.53
Zm00001d007553_P001	Maize	nucleus	25.23	29.47
Zm00001d011011_P001	Maize	cytosol, nucleus, peroxisome	31.08	22.4
Zm00001d031574_P001	Maize	endoplasmic reticulum	30.63	17.53

Protein Annotations

Gene3D:1.10.20.10	Gene3D:1.25.40.180	MapMan:12.1.2	UniProt:A0A1D6GZ27	ProteinID:AQK68006.1	InterPro:ARM-type_fold
GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0016020
GO:GO:0016021	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A	InterPro:Histone_H2A_C	InterPro:IPR009072
InterPro:IPR016021	InterPro:MIF4-like_sf	PFAM:PF16211	PRINTS:PR00620	PANTHER:PTHR23253	PANTHER:PTHR23253:SF35
SMART:SM00414	SUPFAM:SSF47113	SUPFAM:SSF48371	TMHMM:TMhelix	UniParc:UPI0008423727	EnsemblPlantsGene:Zm00001d015078
EnsemblPlants:Zm00001d015078_P001	EnsemblPlants:Zm00001d015078_T001	SEG:seg	:	:	:

Description

Histone H2A variant 1

Coordinates

chr5:-:74418136..74420862

Molecular Weight (calculated)

24941.4 Da

IEP (calculated)

5.327

GRAVY (calculated)

0.118

Length

222 amino acids

Sequence
(BLAST)

001: MEGNLELSTL EMRTTLCIHG FYWLLYFLFT LYVLVPSLVD MKKPPEMISG NMKLVTWFQS LHRPSVFFAR FQHVLSTLED AVTDAPKATK FLGQIFARVV
101: LEDGISLTEW DGREELAGQH ALEDSLASED LGSMLESIRV ERAKYSLMCF QFPVGRIHPV YSAAILEYLT VEVLELAGNA SKDLKLAIRG DEEMDTLIKG
201: TIACGGVIPH IHKSLINKSS KE

Best Arabidopsis Sequence Match ( AT1G52740.1 )
(BLAST)

001: MSGKGAKGLI MGKPSGSDKD KDKKKPITRS SRAGLQFPVG RVHRLLKTRS TAHGRVGATA AVYTAAILEY LTAEVLELAG NASKDLKVKR ISPRHLQLAI
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SAKE

Arabidopsis Description

HTA9Probable histone H2A variant 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C944]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.