Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d027775_P001 | Maize | cytosol, extracellular, mitochondrion, nucleus | 51.05 | 62.93 |
| Zm00001d009350_P001 | Maize | cytosol | 50.35 | 62.61 |
| Zm00001d009769_P001 | Maize | cytosol, extracellular, nucleus | 48.95 | 60.34 |
| Zm00001d033146_P001 | Maize | cytosol | 48.95 | 60.34 |
| Zm00001d033979_P001 | Maize | mitochondrion, nucleus | 56.64 | 59.12 |
| Zm00001d013300_P001 | Maize | mitochondrion, nucleus | 56.64 | 59.12 |
| VIT_09s0002g05770.t01 | Wine grape | endoplasmic reticulum, extracellular | 51.75 | 58.27 |
| Zm00001d027760_P001 | Maize | plastid | 54.55 | 56.52 |
| CDX99552 | Canola | plastid | 46.15 | 52.38 |
| EES08219 | Sorghum | cytosol | 36.36 | 48.6 |
| Zm00001d007567_P001 | Maize | nucleus | 44.76 | 48.48 |
| AT4G13570.2 | Thale cress | cytoskeleton, cytosol, nucleus | 37.76 | 43.55 |
| Zm00001d052588_P001 | Maize | cytosol, nucleus, plastid | 53.15 | 38.58 |
| Zm00001d007553_P001 | Maize | nucleus | 44.76 | 33.68 |
| Zm00001d015078_P001 | Maize | endoplasmic reticulum, vacuole | 41.96 | 27.03 |
| Zm00001d011011_P001 | Maize | cytosol, nucleus, peroxisome | 49.65 | 23.05 |
| Zm00001d031574_P001 | Maize | endoplasmic reticulum | 44.76 | 16.49 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | UniProt:A0A1D6J6J4 | ProteinID:AQK43542.1 | GO:GO:0000786 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A |
| InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C | InterPro:IPR009072 | PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 |
| PANTHER:PTHR23430 | PANTHER:PTHR23430:SF105 | SMART:SM00414 | SUPFAM:SSF47113 | UniParc:UPI000844F8B7 | EnsemblPlantsGene:Zm00001d025335 |
| EnsemblPlants:Zm00001d025335_P001 | EnsemblPlants:Zm00001d025335_T001 | : | : | : | : |
Description
Histone H2A variant 1
Coordinates
chr10:+:114540784..114543704
Molecular Weight (calculated)
15790.3 Da
IEP (calculated)
9.630
GRAVY (calculated)
-0.345
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKKGQYVKS QGLVDMNKPP EMISGNMKVG SANSFERKDL ERELLAKLLV YLCTAQEHLL SQRQLLQGYA GYSAAILEYL TAEVLELAGN AGKDLKVKRI
101: TPRHLQLAIH GDEELDTHIK GTIVGGGVRP HIHKSLINKS SKE
101: TPRHLQLAIH GDEELDTHIK GTIVGGGVRP HIHKSLINKS SKE
001: MSGKGAKGLI MGKPSGSDKD KDKKKPITRS SRAGLQFPVG RVHRLLKTRS TAHGRVGATA AVYTAAILEY LTAEVLELAG NASKDLKVKR ISPRHLQLAI
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SAKE
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SAKE
Arabidopsis Description
HTA9Probable histone H2A variant 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C944]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.