Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d009350_P001 | Maize | cytosol | 93.97 | 94.78 |
| Zm00001d027775_P001 | Maize | cytosol, extracellular, mitochondrion, nucleus | 90.52 | 90.52 |
| Zm00001d009769_P001 | Maize | cytosol, extracellular, nucleus | 89.66 | 89.66 |
| Zm00001d013300_P001 | Maize | mitochondrion, nucleus | 81.9 | 69.34 |
| Zm00001d033979_P001 | Maize | mitochondrion, nucleus | 81.9 | 69.34 |
| Zm00001d027760_P001 | Maize | plastid | 76.72 | 64.49 |
| Zm00001d007567_P001 | Maize | nucleus | 62.93 | 55.3 |
| HORVU1Hr1G035130.3 | Barley | nucleus | 75.86 | 51.46 |
| Zm00001d025335_P001 | Maize | cytosol | 60.34 | 48.95 |
| Zm00001d052588_P001 | Maize | cytosol, nucleus, plastid | 81.9 | 48.22 |
| Zm00001d007553_P001 | Maize | nucleus | 61.21 | 37.37 |
| Zm00001d011011_P001 | Maize | cytosol, nucleus, peroxisome | 77.59 | 29.22 |
| Zm00001d015078_P001 | Maize | endoplasmic reticulum, vacuole | 51.72 | 27.03 |
| Zm00001d031574_P001 | Maize | endoplasmic reticulum | 70.69 | 21.13 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | UniProt:A0A1D6KWJ8 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 |
| InterPro:Histone_H2A_C | InterPro:IPR009072 | ProteinID:ONM06843.1 | PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 |
| PANTHER:PTHR23430 | PANTHER:PTHR23430:SF105 | SMART:SM00414 | SUPFAM:SSF47113 | UniParc:UPI00084342B3 | EnsemblPlantsGene:Zm00001d033146 |
| EnsemblPlants:Zm00001d033146_P001 | EnsemblPlants:Zm00001d033146_T001 | : | : | : | : |
Description
Histone H2A variant 1
Coordinates
chr1:+:252106074..252106424
Molecular Weight (calculated)
12803.6 Da
IEP (calculated)
10.258
GRAVY (calculated)
-0.224
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MLESIKVERA KYSLMCFQFP VGRIHRQLKQ RTQANGRVGA TTAVYSAAIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL AIHGDEELDT LTKSTIAGGG
101: VILHIQKSLT NKSSKE
101: VILHIQKSLT NKSSKE
001: MAGKGGKGLL AAKTTAAAAN KDSVKKKSIS RSSRAGIQFP VGRIHRQLKQ RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLV NKVTKD
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLV NKVTKD
Arabidopsis Description
HTA8Probable histone H2A variant 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SII0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.