Factsheet for Zm00001d027760_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 1
endoplasmic reticulum 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017660_P021
Zm00001d035012_P002
Zm00001d051507_P007

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54560.1	Zm00001d035012_P002	AT2G36740.1	17470967
AT3G54560.1	Zm00001d017660_P021	AT3G12810.1	17470967
AT3G54560.1	Zm00001d051507_P007	AT3G12810.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07107	Sorghum	mitochondrion	100.0	100.0
Os03t0162200-01	Rice	nucleus	97.83	97.83
GSMUA_Achr1P04720_001	Banana	nucleus	90.58	93.28
Zm00001d033979_P001	Maize	mitochondrion, nucleus	92.03	92.7
Zm00001d013300_P001	Maize	mitochondrion, nucleus	92.03	92.7
GSMUA_Achr1P27260_001	Banana	nucleus	89.86	92.54
GSMUA_Achr3P15210_001	Banana	nucleus	89.86	92.54
GSMUA_Achr8P26920_001	Banana	nucleus	89.13	91.79
GSMUA_Achr8P04480_001	Banana	nucleus	89.13	91.79
PGSC0003DMT400049686	Potato	nucleus	92.03	91.37
PGSC0003DMT400051893	Potato	extracellular	90.58	91.24
VIT_00s0179g00340.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	86.96	90.23
KRH71352	Soybean	mitochondrion	88.41	89.71
KRH32088	Soybean	nucleus	88.41	89.71
AT3G54560.1	Thale cress	cytosol	88.41	89.71
KRH67280	Soybean	cytosol, mitochondrion, nucleus, plastid	87.68	88.97
KRG95601	Soybean	cytosol, mitochondrion, nucleus, plastid	87.68	88.97
Bra003188.1-P	Field mustard	nucleus	88.41	88.41
CDY07535	Canola	nucleus	88.41	88.41
CDX67603	Canola	nucleus	88.41	88.41
Bra014808.1-P	Field mustard	mitochondrion	86.23	87.5
CDY57201	Canola	nucleus	76.81	86.89
Bra007080.1-P	Field mustard	cytosol	85.51	86.76
AT2G38810.3	Thale cress	mitochondrion	85.51	86.76
CDX78246	Canola	cytosol	85.51	86.76
Bra000097.1-P	Field mustard	mitochondrion	84.06	86.57
CDY07697	Canola	mitochondrion	84.06	86.57
CDY14429	Canola	plastid	84.06	86.57
Zm00001d009350_P001	Maize	cytosol	66.67	80.0
Zm00001d027775_P001	Maize	cytosol, extracellular, mitochondrion, nucleus	65.22	77.59
Zm00001d033146_P001	Maize	cytosol	64.49	76.72
Zm00001d009769_P001	Maize	cytosol, extracellular, nucleus	64.49	76.72
Zm00001d007567_P001	Maize	nucleus	73.19	76.52
CDY13216	Canola	mitochondrion	86.23	63.64
Solyc06g084090.2.1	Tomato	nucleus	90.58	61.58
CDX73471	Canola	plastid	85.51	56.73
Zm00001d025335_P001	Maize	cytosol	56.52	54.55
GSMUA_Achr6P23340_001	Banana	mitochondrion	89.86	53.91
Zm00001d007553_P001	Maize	nucleus	72.46	52.63
Zm00001d052588_P001	Maize	cytosol, nucleus, plastid	68.12	47.72
Zm00001d011011_P001	Maize	cytosol, nucleus, peroxisome	71.01	31.82
Zm00001d015078_P001	Maize	endoplasmic reticulum, vacuole	50.0	31.08
Zm00001d031574_P001	Maize	endoplasmic reticulum	60.14	21.39

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100273753	MapMan:12.1.2	UniProt:B4FXB2	EMBL:BT041750	EMBL:EU952379
EMBL:EU952513	EMBL:EU961993	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2A_C
InterPro:Histone_H2A_CS	InterPro:IPR009072	ProteinID:ONL93876.1	PFAM:PF00125	PFAM:PF16211	PRINTS:PR00620
ScanProsite:PS00046	PANTHER:PTHR23430	PANTHER:PTHR23430:SF105	SMART:SM00414	SUPFAM:SSF47113	UniParc:UPI00017B7A03
EnsemblPlantsGene:Zm00001d027760	EnsemblPlants:Zm00001d027760_P001	EnsemblPlants:Zm00001d027760_T001	SEG:seg	:	:

Description

Histone H2A

Coordinates

chr1:+:13023613..13024482

Molecular Weight (calculated)

14598.8 Da

IEP (calculated)

11.115

GRAVY (calculated)

-0.342

Length

138 amino acids

Sequence
(BLAST)

001: MAGKGGKGLL AAKTTAAKST DKDKDRKKAP VSRSSRAGLQ FPVGRIHRQL KSRASAHGRV GATAAVYSAA ILEYLTAEVL ELAGNASKDL KVKRITPRHL
101: QLAIRGDEEL DTLIKGTIAG GGVIPHIHKS LINKTAKE

Best Arabidopsis Sequence Match ( AT3G54560.1 )
(BLAST)

001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE

Arabidopsis Description

H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.