Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr3P26510_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54560.1 | GSMUA_AchrUn_... | AT2G36740.1 | 17470967 |
| AT3G54560.1 | GSMUA_Achr3P26510_001 | AT3G12810.1 | 17470967 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P27260_001 | Banana | nucleus | 97.76 | 97.76 |
| GSMUA_Achr8P04480_001 | Banana | nucleus | 97.01 | 97.01 |
| GSMUA_Achr3P15210_001 | Banana | nucleus | 96.27 | 96.27 |
| GSMUA_Achr8P26920_001 | Banana | nucleus | 96.27 | 96.27 |
| PGSC0003DMT400051893 | Potato | extracellular | 94.78 | 92.7 |
| Os03t0743400-01 | Rice | nucleus | 94.03 | 91.97 |
| TraesCS7D01G246600.1 | Wheat | mitochondrion | 94.78 | 91.37 |
| TraesCS1B01G154500.1 | Wheat | mitochondrion | 94.78 | 91.37 |
| TraesCS1A01G132400.1 | Wheat | mitochondrion | 94.78 | 91.37 |
| Os03t0162200-01 | Rice | nucleus | 94.03 | 91.3 |
| Zm00001d033979_P001 | Maize | mitochondrion, nucleus | 93.28 | 91.24 |
| Zm00001d013300_P001 | Maize | mitochondrion, nucleus | 93.28 | 91.24 |
| Os10t0418000-01 | Rice | nucleus | 94.03 | 90.65 |
| PGSC0003DMT400049686 | Potato | nucleus | 94.03 | 90.65 |
| EES07107 | Sorghum | mitochondrion | 93.28 | 90.58 |
| Zm00001d027760_P001 | Maize | plastid | 93.28 | 90.58 |
| AT3G54560.1 | Thale cress | cytosol | 90.3 | 88.97 |
| AT2G38810.3 | Thale cress | mitochondrion | 90.3 | 88.97 |
| Bra000097.1-P | Field mustard | mitochondrion | 88.81 | 88.81 |
| CDY07697 | Canola | mitochondrion | 88.81 | 88.81 |
| VIT_00s0179g00340.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 88.06 | 88.72 |
| KRG95601 | Soybean | cytosol, mitochondrion, nucleus, plastid | 88.81 | 87.5 |
| KRH32088 | Soybean | nucleus | 88.81 | 87.5 |
| KRH67280 | Soybean | cytosol, mitochondrion, nucleus, plastid | 88.81 | 87.5 |
| KRH71352 | Soybean | mitochondrion | 88.81 | 87.5 |
| CDY14429 | Canola | plastid | 87.31 | 87.31 |
| CDY07535 | Canola | nucleus | 89.55 | 86.96 |
| Bra003188.1-P | Field mustard | nucleus | 89.55 | 86.96 |
| CDX67603 | Canola | nucleus | 89.55 | 86.96 |
| CDX78246 | Canola | cytosol | 88.06 | 86.76 |
| Bra014808.1-P | Field mustard | mitochondrion | 88.06 | 86.76 |
| Bra007080.1-P | Field mustard | cytosol | 88.06 | 86.76 |
| CDY57201 | Canola | nucleus | 78.36 | 86.07 |
| KXG28801 | Sorghum | nucleus | 85.07 | 85.71 |
| GSMUA_Achr10P... | Banana | nucleus | 85.07 | 83.82 |
| KXG40126 | Sorghum | nucleus | 81.34 | 81.95 |
| Zm00001d007567_P001 | Maize | nucleus | 72.39 | 73.48 |
| CDY13216 | Canola | mitochondrion | 88.06 | 63.1 |
| Solyc06g084090.2.1 | Tomato | nucleus | 94.78 | 62.56 |
| GSMUA_Achr6P23340_001 | Banana | mitochondrion | 97.76 | 56.96 |
| CDX73471 | Canola | plastid | 88.06 | 56.73 |
| TraesCS2D01G571800.1 | Wheat | mitochondrion, nucleus, plastid | 50.75 | 56.67 |
| Zm00001d007553_P001 | Maize | nucleus | 72.39 | 51.05 |
| GSMUA_Achr2P01530_001 | Banana | endoplasmic reticulum, plasma membrane | 35.82 | 45.28 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005694 | GO:GO:0046982 | EnsemblPlantsGene:GSMUA_Achr1G04720_001 | EnsemblPlants:GSMUA_Achr1P04720_001 | EnsemblPlants:GSMUA_Achr1T04720_001 | InterPro:Histone-fold |
| InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C | InterPro:Histone_H2A_CS | InterPro:IPR009072 | UniProt:M0RX30 |
| PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 | ScanProsite:PS00046 | PANTHER:PTHR23430 | PANTHER:PTHR23430:SF105 |
| SMART:SM00414 | SUPFAM:SSF47113 | UniParc:UPI000296598C | SEG:seg | : | : |
Description
Histone H2A variant 1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G04720_001]
Coordinates
chr1:-:3914208..3915002
Molecular Weight (calculated)
14231.4 Da
IEP (calculated)
11.120
GRAVY (calculated)
-0.322
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKGGKGLL AAKTTAANKD KDKKKPVSRS SRAGLQFPVG RIHRQLKTRI SANGRVGATA AVYSAAILEY LTAEVLELAG NASKDLKVKR ITPRHLQLAI
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK STKE
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK STKE
001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
Arabidopsis Description
H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.