Factsheet for Os03t0743400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
endoplasmic reticulum 1
nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

nucleus: 18022940
nucleus: 18203134
plastid: 21433289
nucleus: 23777608
extracellular: 28232208

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0689800-01
Os08t0192400-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54560.1	Os08t0192400-00	AT2G36740.1	17470967
AT3G54560.1	Os02t0689800-01	AT3G12810.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033979_P001	Maize	mitochondrion, nucleus	99.27	99.27
Zm00001d013300_P001	Maize	mitochondrion, nucleus	99.27	99.27
GSMUA_Achr8P04480_001	Banana	nucleus	92.7	94.78
Os03t0162200-01	Rice	nucleus	94.89	94.2
GSMUA_Achr3P15210_001	Banana	nucleus	91.97	94.03
GSMUA_Achr8P26920_001	Banana	nucleus	91.97	94.03
GSMUA_Achr1P04720_001	Banana	nucleus	91.97	94.03
GSMUA_Achr1P27260_001	Banana	nucleus	90.51	92.54
PGSC0003DMT400049686	Potato	nucleus	91.24	89.93
Os10t0418000-01	Rice	nucleus	91.24	89.93
PGSC0003DMT400051893	Potato	extracellular	89.78	89.78
KRH71352	Soybean	mitochondrion	89.05	89.71
KRH67280	Soybean	cytosol, mitochondrion, nucleus, plastid	89.05	89.71
KRH32088	Soybean	nucleus	89.05	89.71
KRG95601	Soybean	cytosol, mitochondrion, nucleus, plastid	89.05	89.71
VIT_00s0179g00340.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	85.4	87.97
AT2G38810.3	Thale cress	mitochondrion	86.13	86.76
KXG28801	Sorghum	nucleus	83.94	86.47
AT3G54560.1	Thale cress	cytosol	85.4	86.03
Bra014808.1-P	Field mustard	mitochondrion	84.67	85.29
CDY14429	Canola	plastid	83.21	85.07
CDY07697	Canola	mitochondrion	83.21	85.07
Bra000097.1-P	Field mustard	mitochondrion	83.21	85.07
CDX67603	Canola	nucleus	85.4	84.78
Bra003188.1-P	Field mustard	nucleus	85.4	84.78
CDY07535	Canola	nucleus	85.4	84.78
CDY57201	Canola	nucleus	75.18	84.43
Bra007080.1-P	Field mustard	cytosol	83.21	83.82
CDX78246	Canola	cytosol	83.21	83.82
CDY13216	Canola	mitochondrion	84.67	62.03
Solyc06g084090.2.1	Tomato	nucleus	89.78	60.59
CDX73471	Canola	plastid	83.21	54.81
GSMUA_Achr6P23340_001	Banana	mitochondrion	90.51	53.91

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.2	EntrezGene:4334071	ProteinID:AAP12995.1	ProteinID:AAR87284.1	ProteinID:ABF98814.1
ProteinID:ABF98815.1	EMBL:AK120299	ProteinID:BAF13146.1	ProteinID:BAS86324.1	ProteinID:EEE59908.1	GO:GO:0000786
GO:GO:0000790	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006139
GO:GO:0006342	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0040029	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2A_C
InterPro:Histone_H2A_CS	InterPro:IPR009072	EnsemblPlantsGene:Os03g0743400	EnsemblPlants:Os03t0743400-01	PFAM:PF00125	PFAM:PF16211
PRINTS:PR00620	ScanProsite:PS00046	PANTHER:PTHR23430	PANTHER:PTHR23430:SF105	UniProt:Q84MP7	SMART:SM00414
SUPFAM:SSF47113	UniParc:UPI000018F121	RefSeq:XP_015630918.1	RefSeq:XP_015630919.1	SEG:seg	:

Description

Similar to H2A protein. (Os03t0743400-01)

Coordinates

chr3:+:30513870..30516672

Molecular Weight (calculated)

14459.7 Da

IEP (calculated)

11.120

GRAVY (calculated)

-0.350

Length

137 amino acids

Sequence
(BLAST)

001: MAGKGGKGLL AAKTTAAKSA EKDKGKKAPV SRSSRAGLQF PVGRIHRQLK QRTQANGRVG ATAAVYSAAI LEYLTAEVLE LAGNASKDLK VKRITPRHLQ
101: LAIRGDEELD TLIKGTIAGG GVIPHIHKSL INKSSKE

Best Arabidopsis Sequence Match ( AT3G54560.1 )
(BLAST)

001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE

Arabidopsis Description

H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.