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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr8P04480_001 Banana nucleus 98.51 98.51
GSMUA_Achr8P26920_001 Banana nucleus 98.51 98.51
GSMUA_Achr1P04720_001 Banana nucleus 96.27 96.27
GSMUA_Achr1P27260_001 Banana nucleus 95.52 95.52
Os03t0743400-01 Rice nucleus 94.03 91.97
Zm00001d033979_P001 Maize mitochondrion, nucleus 93.28 91.24
Zm00001d013300_P001 Maize mitochondrion, nucleus 93.28 91.24
Os03t0162200-01 Rice nucleus 93.28 90.58
TraesCS1B01G154500.1 Wheat mitochondrion 93.28 89.93
TraesCS1A01G132400.1 Wheat mitochondrion 93.28 89.93
TraesCS7D01G246600.1 Wheat mitochondrion 93.28 89.93
EES07107 Sorghum mitochondrion 92.54 89.86
Zm00001d027760_P001 Maize plastid 92.54 89.86
PGSC0003DMT400049686 Potato nucleus 92.54 89.21
PGSC0003DMT400051893 Potato extracellular 91.04 89.05
Os10t0418000-01 Rice nucleus 91.79 88.49
VIT_00s0179g00340.t01 Wine grape cytosol, mitochondrion, nucleus, plastid 87.31 87.97
KRH71352 Soybean mitochondrion 88.81 87.5
KRH67280 Soybean cytosol, mitochondrion, nucleus, plastid 88.81 87.5
KRH32088 Soybean nucleus 88.81 87.5
KRG95601 Soybean cytosol, mitochondrion, nucleus, plastid 88.81 87.5
AT3G54560.1 Thale cress cytosol 88.81 87.5
KXG28801 Sorghum nucleus 85.82 86.47
CDX78246 Canola cytosol 87.31 86.03
Bra007080.1-P Field mustard cytosol 87.31 86.03
AT2G38810.3 Thale cress mitochondrion 87.31 86.03
Bra000097.1-P Field mustard mitochondrion 85.82 85.82
CDY07697 Canola mitochondrion 85.82 85.82
Bra003188.1-P Field mustard nucleus 88.06 85.51
CDY07535 Canola nucleus 88.06 85.51
CDX67603 Canola nucleus 88.06 85.51
GSMUA_Achr10P... Banana nucleus 86.57 85.29
Bra014808.1-P Field mustard mitochondrion 86.57 85.29
CDY57201 Canola nucleus 76.87 84.43
CDY14429 Canola plastid 84.33 84.33
KXG40126 Sorghum nucleus 82.09 82.71
Zm00001d007567_P001 Maize nucleus 73.88 75.0
CDY13216 Canola mitochondrion 86.57 62.03
Solyc06g084090.2.1 Tomato nucleus 91.04 60.1
CDX73471 Canola plastid 87.31 56.25
TraesCS2D01G571800.1 Wheat mitochondrion, nucleus, plastid 50.0 55.83
GSMUA_Achr6P23340_001 Banana mitochondrion 95.52 55.65
Zm00001d007553_P001 Maize nucleus 73.88 52.11
GSMUA_Achr2P01530_001 Banana endoplasmic reticulum, plasma membrane 35.82 45.28
Protein Annotations
Gene3D:1.10.20.10MapMan:12.1.2ncoils:CoilGO:GO:0000786GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0005694GO:GO:0046982EnsemblPlantsGene:GSMUA_Achr3G15210_001EnsemblPlants:GSMUA_Achr3P15210_001EnsemblPlants:GSMUA_Achr3T15210_001
InterPro:Histone-foldInterPro:Histone_H2AInterPro:Histone_H2A/H2B/H3InterPro:Histone_H2A_CInterPro:Histone_H2A_CSInterPro:IPR009072
UniProt:M0SET7PFAM:PF00125PFAM:PF16211PRINTS:PR00620ScanProsite:PS00046PANTHER:PTHR23430
PANTHER:PTHR23430:SF105SMART:SM00414SUPFAM:SSF47113UniParc:UPI00029609F8SEG:seg:
Description
Probable histone H2A variant 3 [Source:GMGC_GENE;Acc:GSMUA_Achr3G15210_001]
Coordinates
chr3:-:15769999..15772666
Molecular Weight (calculated)
14214.4 Da
IEP (calculated)
11.120
GRAVY (calculated)
-0.340
Length
134 amino acids
Sequence
(BLAST)
001: MAGKGGKGLL AAKTTAGNKD KDKKKPVSRS ARAGLQFPVG RIHRQLKSRI QANGRVGATA AVYSAAILEY LTAEVLELAG NASKDLKVKR ITPRHLQLAI
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SSKE
Best Arabidopsis Sequence Match ( AT3G54560.1 )
(BLAST)
001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
Arabidopsis Description
H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.