Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G154500.1 | Wheat | mitochondrion | 100.0 | 100.0 |
| TraesCS1A01G132400.1 | Wheat | mitochondrion | 100.0 | 100.0 |
| Os10t0418000-01 | Rice | nucleus | 96.4 | 96.4 |
| GSMUA_Achr1P04720_001 | Banana | nucleus | 91.37 | 94.78 |
| GSMUA_Achr8P04480_001 | Banana | nucleus | 90.65 | 94.03 |
| GSMUA_Achr8P26920_001 | Banana | nucleus | 89.93 | 93.28 |
| GSMUA_Achr3P15210_001 | Banana | nucleus | 89.93 | 93.28 |
| GSMUA_Achr1P27260_001 | Banana | nucleus | 89.93 | 93.28 |
| KRH71352 | Soybean | mitochondrion | 89.93 | 91.91 |
| KRH32088 | Soybean | nucleus | 89.93 | 91.91 |
| AT3G54560.1 | Thale cress | cytosol | 89.21 | 91.18 |
| KRH67280 | Soybean | cytosol, mitochondrion, nucleus, plastid | 89.21 | 91.18 |
| KRG95601 | Soybean | cytosol, mitochondrion, nucleus, plastid | 89.21 | 91.18 |
| PGSC0003DMT400049686 | Potato | nucleus | 90.65 | 90.65 |
| PGSC0003DMT400051893 | Potato | extracellular | 89.21 | 90.51 |
| VIT_00s0179g00340.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 85.61 | 89.47 |
| Bra003188.1-P | Field mustard | nucleus | 88.49 | 89.13 |
| CDX67603 | Canola | nucleus | 88.49 | 89.13 |
| CDY07535 | Canola | nucleus | 88.49 | 89.13 |
| Bra014808.1-P | Field mustard | mitochondrion | 87.05 | 88.97 |
| AT2G38810.3 | Thale cress | mitochondrion | 87.05 | 88.97 |
| CDY57201 | Canola | nucleus | 77.7 | 88.52 |
| CDX78246 | Canola | cytosol | 86.33 | 88.24 |
| Bra007080.1-P | Field mustard | cytosol | 86.33 | 88.24 |
| CDY07697 | Canola | mitochondrion | 84.89 | 88.06 |
| Bra000097.1-P | Field mustard | mitochondrion | 84.89 | 88.06 |
| CDY14429 | Canola | plastid | 83.45 | 86.57 |
| CDY13216 | Canola | mitochondrion | 87.05 | 64.71 |
| Solyc06g084090.2.1 | Tomato | nucleus | 89.21 | 61.08 |
| TraesCS2D01G571800.1 | Wheat | mitochondrion, nucleus, plastid | 50.36 | 58.33 |
| CDX73471 | Canola | plastid | 86.33 | 57.69 |
| GSMUA_Achr6P23340_001 | Banana | mitochondrion | 89.93 | 54.35 |
| TraesCS6D01G040300.1 | Wheat | nucleus | 51.8 | 48.98 |
| TraesCS3D01G539500.1 | Wheat | cytosol, mitochondrion, nucleus | 41.01 | 47.11 |
| TraesCS3D01G521700.1 | Wheat | nucleus | 48.2 | 38.07 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C | InterPro:IPR009072 |
| PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 | PANTHER:PTHR23430 | PANTHER:PTHR23430:SF105 | SMART:SM00414 |
| SUPFAM:SSF47113 | EnsemblPlantsGene:TraesCS7D01G246600 | EnsemblPlants:TraesCS7D01G246600.1 | TIGR:cd00074 | SEG:seg | : |
Description
No Description!
Coordinates
chr7D:+:215927290..215928517
Molecular Weight (calculated)
14643.9 Da
IEP (calculated)
11.052
GRAVY (calculated)
-0.319
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKGGKGLL AAKTTAAKGA ADKDKDKKKA PVSRSSRAGI QFPVGRIHRQ LKQRVSANGR VGATAAVYSA AILEYLTAEV LELAGNASKD LKVKRITPRH
101: LQLAIRGDEE LDTLIKGTIA GGGVIPHIHK SLINKTSKE
101: LQLAIRGDEE LDTLIKGTIA GGGVIPHIHK SLINKTSKE
001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
Arabidopsis Description
H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.