Factsheet for TraesCS7D01G324500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G132400.1
TraesCS1B01G154500.1
TraesCS2D01G571800.1
TraesCS5A01G151300.1
TraesCS5B01G149800.2
TraesCS5D01G156400.2
TraesCS7D01G246600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36740.1	TraesCS1A01G132400.1	AT3G54560.1	17470967
AT2G36740.1	TraesCS1B01G154500.1	AT3G54560.1	17470967
AT2G36740.1	TraesCS2D01G571800.1	AT3G54560.1	17470967
AT2G36740.1	TraesCS7D01G246600.1	AT3G54560.1	17470967
AT2G36740.1	TraesCS5A01G151300.1	AT5G37055.1	17470967
AT2G36740.1	TraesCS5B01G149800.2	AT5G37055.1	17470967
AT2G36740.1	TraesCS5D01G156400.2	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G327700.1	Wheat	nucleus	97.54	97.54
TraesCS7B01G228400.1	Wheat	nucleus	94.54	94.54
HORVU7Hr1G078440.9	Barley	nucleus	95.63	86.63
Os08t0192400-00	Rice	nucleus	79.51	80.61
EES14361	Sorghum	nucleus	77.6	78.89
Zm00001d035012_P002	Maize	nucleus	75.14	75.14
GSMUA_AchrUn_...	Banana	nucleus	49.73	67.16
VIT_16s0039g02650.t01	Wine grape	nucleus	51.64	62.79
KRH58568	Soybean	nucleus	56.56	58.31
CDY33188	Canola	nucleus	56.83	57.14
Solyc04g009830.2.1	Tomato	nucleus	55.74	56.67
AT2G36740.1	Thale cress	nucleus	56.28	56.44
CDX75016	Canola	nucleus	56.28	56.28
PGSC0003DMT400065423	Potato	nucleus	54.1	52.11

Protein Annotations

MapMan:12.4.4.2	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006338	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0043486	PFAM:PF05764	PFAM:PF08265	PANTHER:PTHR13275
SMART:SM00993	EnsemblPlantsGene:TraesCS7D01G324500	EnsemblPlants:TraesCS7D01G324500.1	InterPro:Vps72/YL1	InterPro:Vps72/YL1_C	SEG:seg

Description

No Description!

Coordinates

chr7D:-:414372169..414375214

Molecular Weight (calculated)

41858.3 Da

IEP (calculated)

5.121

GRAVY (calculated)

-1.064

Length

366 amino acids

Sequence
(BLAST)

001: MADHAADEEE PPVLLDRAAR ATRGKRITKL IEEEVELDEA FWGQEALKED EEDDNYQEEQ DAGDVFDSDF DEDEPQPDDD PGKEVSERLP IKKRLFFPGK
101: TMKKMKAKKK KKKNKVIKLE DDEGIDDKTT DKTTSSKQSD VPDEWESEKT IRKSTRTSVI VRQAEREAIR AEKQATAKPI KKRKEGEEKR MTQEEMLLEA
201: AETEIMNMRN LERVLAREEE VKKKAVVQKA VYEGPTLRFH SRDGESRLEF INGASFGSEL CTTSTPYPEK SVCVVTGLPA KYRDPKTGLP YATMAAFKII
301: RESFLKEEPD KKRPNMSNMG ELFESVAGEH STPKKKRIES RSPISGDLRH GGRFRRIPAL DVMDED

Best Arabidopsis Sequence Match ( AT2G36740.1 )
(BLAST)

001: MEIDEEEPMV FLDRTTRATR GKRMTKLLDD EVEEDEQFWN QEALKEEEHD DEYEAEREVA DEFDSDFNDD EPEPDAVAVN EKELRDLPKK RLIYPGKTAS
101: KKKKKKTKVV SQLEYIPGDE KPGEELGNKE QEEKEENEAQ EDMEGEKVIR KSTRTSVVVR QAERDALRAA IQATTKPIQR KKVGEEKRMT QEEMLLEAAQ
201: TEIMNLRNLE RVLAREEEVK KKAIVHKAVY KGPQIRYHSK DGCNYLEFCN GASFNSELST KSVPYPEKAV CVITGLPAKY RDPKTGLPYA TRDAFKAIRE
301: RFMDEHDGLR KKMEMGDLFD TLVAKGFATK QKRTKIPKSN KSFSLRSSAR FLSSESEEES EEDSD

Arabidopsis Description

SWC2SWR1 complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IP06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.