Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY33188 | Canola | nucleus | 81.92 | 82.14 |
| CDX75016 | Canola | nucleus | 81.37 | 81.15 |
| VIT_16s0039g02650.t01 | Wine grape | nucleus | 57.26 | 69.44 |
| GSMUA_AchrUn_... | Banana | nucleus | 51.51 | 69.37 |
| Solyc04g009830.2.1 | Tomato | nucleus | 60.27 | 61.11 |
| KRH58568 | Soybean | nucleus | 58.36 | 60.0 |
| PGSC0003DMT400065423 | Potato | nucleus | 60.0 | 57.63 |
| Os08t0192400-00 | Rice | nucleus | 55.89 | 56.51 |
| EES14361 | Sorghum | nucleus | 55.62 | 56.39 |
| TraesCS7D01G324500.1 | Wheat | nucleus | 56.44 | 56.28 |
| TraesCS7A01G327700.1 | Wheat | nucleus | 55.34 | 55.19 |
| TraesCS7B01G228400.1 | Wheat | nucleus | 53.7 | 53.55 |
| Zm00001d035012_P002 | Maize | nucleus | 53.7 | 53.55 |
| HORVU7Hr1G078440.9 | Barley | nucleus | 55.07 | 49.75 |
Protein Annotations
| MapMan:12.4.4.2 | EntrezGene:818246 | ProteinID:AAD20150.1 | ProteinID:AEC09293.1 | EMBL:AK227712 | ArrayExpress:AT2G36740 |
| EnsemblPlantsGene:AT2G36740 | RefSeq:AT2G36740 | TAIR:AT2G36740 | RefSeq:AT2G36740-TAIR-G | EnsemblPlants:AT2G36740.1 | TAIR:AT2G36740.1 |
| Unigene:At.37514 | ncoils:Coil | UniProt:F4IP06 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006338 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030154 | GO:GO:0043486 |
| RefSeq:NP_181212.2 | PFAM:PF05764 | PFAM:PF08265 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR13275 | SMART:SM00993 | Symbol:SWC2 | UniParc:UPI00005DC2D4 |
| InterPro:Vps72/YL1 | InterPro:Vps72/YL1_C | SEG:seg | : | : | : |
Description
SWC2SWR1 complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IP06]
Coordinates
chr2:-:15406622..15409912
Molecular Weight (calculated)
42150.4 Da
IEP (calculated)
4.859
GRAVY (calculated)
-1.092
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIDEEEPMV FLDRTTRATR GKRMTKLLDD EVEEDEQFWN QEALKEEEHD DEYEAEREVA DEFDSDFNDD EPEPDAVAVN EKELRDLPKK RLIYPGKTAS
101: KKKKKKTKVV SQLEYIPGDE KPGEELGNKE QEEKEENEAQ EDMEGEKVIR KSTRTSVVVR QAERDALRAA IQATTKPIQR KKVGEEKRMT QEEMLLEAAQ
201: TEIMNLRNLE RVLAREEEVK KKAIVHKAVY KGPQIRYHSK DGCNYLEFCN GASFNSELST KSVPYPEKAV CVITGLPAKY RDPKTGLPYA TRDAFKAIRE
301: RFMDEHDGLR KKMEMGDLFD TLVAKGFATK QKRTKIPKSN KSFSLRSSAR FLSSESEEES EEDSD
101: KKKKKKTKVV SQLEYIPGDE KPGEELGNKE QEEKEENEAQ EDMEGEKVIR KSTRTSVVVR QAERDALRAA IQATTKPIQR KKVGEEKRMT QEEMLLEAAQ
201: TEIMNLRNLE RVLAREEEVK KKAIVHKAVY KGPQIRYHSK DGCNYLEFCN GASFNSELST KSVPYPEKAV CVITGLPAKY RDPKTGLPYA TRDAFKAIRE
301: RFMDEHDGLR KKMEMGDLFD TLVAKGFATK QKRTKIPKSN KSFSLRSSAR FLSSESEEES EEDSD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.