Factsheet for Os08t0192400-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0162200-01
Os03t0367800-01
Os03t0743400-01
Os10t0418000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36740.1	Os03t0162200-01	AT3G54560.1	17470967
AT2G36740.1	Os03t0743400-01	AT3G54560.1	17470967
AT2G36740.1	Os10t0418000-01	AT3G54560.1	17470967
AT2G36740.1	Os03t0367800-01	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14361	Sorghum	nucleus	81.16	81.39
TraesCS7A01G327700.1	Wheat	nucleus	80.61	79.51
TraesCS7D01G324500.1	Wheat	nucleus	80.61	79.51
TraesCS7B01G228400.1	Wheat	nucleus	77.56	76.5
Zm00001d035012_P002	Maize	nucleus	77.01	75.96
HORVU7Hr1G078440.9	Barley	nucleus	80.33	71.78
GSMUA_AchrUn_...	Banana	nucleus	52.63	70.11
VIT_16s0039g02650.t01	Wine grape	nucleus	54.85	65.78
KRH58568	Soybean	nucleus	57.62	58.59
Solyc04g009830.2.1	Tomato	nucleus	56.79	56.94
CDY33188	Canola	nucleus	57.06	56.59
CDX75016	Canola	nucleus	57.34	56.56
AT2G36740.1	Thale cress	nucleus	56.51	55.89
PGSC0003DMT400065423	Potato	nucleus	55.96	53.16

Protein Annotations

MapMan:12.4.4.2	UniProt:A0A0N7KPE4	ProteinID:BAT04186.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006338	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0043486	EnsemblPlantsGene:Os08g0192400
EnsemblPlants:Os08t0192400-00	PFAM:PF05764	PFAM:PF08265	PANTHER:PTHR13275	SMART:SM00993	UniParc:UPI000393B3E6
InterPro:Vps72/YL1	InterPro:Vps72/YL1_C	SEG:seg	:	:	:

Description

Similar to DRP1 protein. (Os08t0192400-00)

Coordinates

chr8:-:5401162..5404366

Molecular Weight (calculated)

41394.5 Da

IEP (calculated)

4.808

GRAVY (calculated)

-1.058

Length

361 amino acids

Sequence
(BLAST)

001: MADLADEDPP VLLDRASRAT RGKRITKLLE DEVEQDEVFW NQDALKEDEE DDNYEEEQDA GDEFDSDFGE DESEPDDEPE KEVRERLPIK KRLIFPGKTM
101: KKINAKKKKK VVPKLEDDSK TDKYSDQQSP SKQTDIPDEL ETGEKTIRKS TRTSVIVRQA EREAIRAEKE ATMKVKKKEG EEKRMTQEEM LLEAAETEII
201: NLRNLERVLA REEEVKKKAV VHKAVYEGPT IRFCSRDGES RLEFINGASF GSELCTTSAP YPEKSICAVT GLPAKYRDPK TGLPYATKEA FKIIRESFLK
301: EEADRKRPNL ANMGELFESI TGEYSTPKKR RIEARSPSIS SDQRHGGRFR RIPALDLLDE D

Best Arabidopsis Sequence Match ( AT2G36740.1 )
(BLAST)

001: MEIDEEEPMV FLDRTTRATR GKRMTKLLDD EVEEDEQFWN QEALKEEEHD DEYEAEREVA DEFDSDFNDD EPEPDAVAVN EKELRDLPKK RLIYPGKTAS
101: KKKKKKTKVV SQLEYIPGDE KPGEELGNKE QEEKEENEAQ EDMEGEKVIR KSTRTSVVVR QAERDALRAA IQATTKPIQR KKVGEEKRMT QEEMLLEAAQ
201: TEIMNLRNLE RVLAREEEVK KKAIVHKAVY KGPQIRYHSK DGCNYLEFCN GASFNSELST KSVPYPEKAV CVITGLPAKY RDPKTGLPYA TRDAFKAIRE
301: RFMDEHDGLR KKMEMGDLFD TLVAKGFATK QKRTKIPKSN KSFSLRSSAR FLSSESEEES EEDSD

Arabidopsis Description

SWC2SWR1 complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IP06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.