Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0269900-01 | |
| Os02t0689800-01 | |
| Os03t0367800-01 | |
| Os04t0654700-02 | |
| Os08t0192400-00 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES16500 | Sorghum | cytosol, nucleus, plastid | 92.0 | 93.06 |
| Zm00001d052325_P001 | Maize | cytosol, nucleus, plastid | 90.29 | 91.33 |
| EES16499 | Sorghum | mitochondrion | 89.14 | 90.7 |
| TraesCS5A01G151300.1 | Wheat | cytosol, nucleus, plastid | 88.0 | 89.02 |
| TraesCS5B01G149800.2 | Wheat | cytosol, nucleus, plastid | 87.43 | 88.44 |
| HORVU5Hr1G047490.2 | Barley | plastid | 88.57 | 83.33 |
| TraesCS5D01G156400.2 | Wheat | cytosol, mitochondrion, nucleus | 84.57 | 78.31 |
| KXG22781 | Sorghum | plastid | 36.57 | 67.37 |
| VIT_08s0007g08060.t01 | Wine grape | mitochondrion | 65.14 | 66.28 |
| KRG98203 | Soybean | nucleus | 64.57 | 65.32 |
| Bra002649.1-P | Field mustard | mitochondrion | 63.43 | 64.91 |
| AT5G37055.1 | Thale cress | mitochondrion | 63.43 | 64.91 |
| CDY32983 | Canola | mitochondrion | 63.43 | 64.91 |
| CDY70943 | Canola | nucleus | 62.86 | 64.33 |
| Solyc03g033480.2.1 | Tomato | nucleus | 62.86 | 64.33 |
| Bra006766.1-P | Field mustard | nucleus | 62.86 | 64.33 |
| PGSC0003DMT400058037 | Potato | nucleus | 62.86 | 64.33 |
| CDY57389 | Canola | mitochondrion | 62.86 | 64.33 |
| KRH30163 | Soybean | nucleus | 63.43 | 64.16 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus | 70.86 | 62.0 |
| CDX99412 | Canola | mitochondrion | 22.29 | 60.0 |
| Bra031327.1-P | Field mustard | mitochondrion | 21.71 | 58.46 |
| CDY40293 | Canola | mitochondrion | 21.71 | 58.46 |
| CDX99372 | Canola | mitochondrion | 21.14 | 56.92 |
| CDX77159 | Canola | mitochondrion | 21.14 | 56.92 |
| CDY60020 | Canola | cytosol | 41.71 | 55.73 |
| Bra032836.1-P | Field mustard | mitochondrion | 36.57 | 49.23 |
Protein Annotations
| MapMan:12.4.4.3 | EntrezGene:4332920 | ProteinID:ABF96146.1 | EMBL:AK108742 | ProteinID:BAS84340.1 | ncoils:Coil |
| ProteinID:EEE59112.1 | GO:GO:0000003 | GO:GO:0000812 | GO:GO:0003674 | GO:GO:0003682 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009605 | GO:GO:0009607 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009909 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 |
| GO:GO:0031063 | GO:GO:0031491 | GO:GO:0040007 | GO:GO:0042742 | GO:GO:0042802 | GO:GO:0042826 |
| GO:GO:0043486 | GO:GO:0046872 | GO:GO:0048638 | InterPro:IPR007529 | EnsemblPlantsGene:Os03g0367800 | EnsemblPlants:Os03t0367800-01 |
| PFAM:PF04438 | PFscan:PS51083 | PANTHER:PTHR13093 | UniProt:Q10KW5 | UniParc:UPI0000DB4661 | RefSeq:XP_015629053.1 |
| InterPro:Znf_HIT | SEG:seg | : | : | : | : |
Description
Similar to Zinc finger HIT domain-containing protein 1. (Os03t0367800-01)
Coordinates
chr3:+:14424593..14427858
Molecular Weight (calculated)
19464.9 Da
IEP (calculated)
8.211
GRAVY (calculated)
-0.747
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGEEEENVG PFRRTSARTR RMATRMASAL ASSDNRAQAA LARLEALESD NAGPEVVDLN DDDEYGSADE EDHVLMQRKQ SKNMKRKTRQ GKALEKKAAR
101: SFMDVLQEAN LESLPPHVPT YSRAAVGPPS TSSRRHYCSV CGSTANYTCV RCGTRFCSCR CQVIHNDTRC LKFVA
101: SFMDVLQEAN LESLPPHVPT YSRAAVGPPS TSSRRHYCSV CGSTANYTCV RCGTRFCSCR CQVIHNDTRC LKFVA
001: MEEEMSNRRV SNRTRKVATK MAAALTSNDN RTQAAIARLE ALENDNGAIE VIDLNDDEEA SLDEDDDLGY LQKKQHKGSK RKTRQAKALE ARKAPKSFLE
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A
Arabidopsis Description
SWC6SWR1 complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW2]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.