Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0007g08060.t01 | Wine grape | mitochondrion | 65.0 | 75.58 |
| KRG98203 | Soybean | nucleus | 64.0 | 73.99 |
| KRH30163 | Soybean | nucleus | 63.5 | 73.41 |
| CDY70943 | Canola | nucleus | 61.5 | 71.93 |
| CDY57389 | Canola | mitochondrion | 61.0 | 71.34 |
| EES16500 | Sorghum | cytosol, nucleus, plastid | 61.5 | 71.1 |
| EES16499 | Sorghum | mitochondrion | 61.0 | 70.93 |
| Os03t0367800-01 | Rice | cytosol, mitochondrion, nucleus | 62.0 | 70.86 |
| Bra002649.1-P | Field mustard | mitochondrion | 60.5 | 70.76 |
| CDY32983 | Canola | mitochondrion | 60.5 | 70.76 |
| TraesCS5B01G149800.2 | Wheat | cytosol, nucleus, plastid | 61.0 | 70.52 |
| TraesCS5A01G151300.1 | Wheat | cytosol, nucleus, plastid | 61.0 | 70.52 |
| Bra006766.1-P | Field mustard | nucleus | 60.0 | 70.18 |
| Solyc03g033480.2.1 | Tomato | nucleus | 59.0 | 69.01 |
| PGSC0003DMT400058037 | Potato | nucleus | 59.0 | 69.01 |
| Zm00001d052325_P001 | Maize | cytosol, nucleus, plastid | 59.5 | 68.79 |
| AT5G37055.1 | Thale cress | mitochondrion | 58.5 | 68.42 |
| HORVU5Hr1G047490.2 | Barley | plastid | 62.0 | 66.67 |
| Bra031327.1-P | Field mustard | mitochondrion | 21.0 | 64.62 |
| CDX99372 | Canola | mitochondrion | 21.0 | 64.62 |
| CDX99412 | Canola | mitochondrion | 21.0 | 64.62 |
| CDY40293 | Canola | mitochondrion | 20.5 | 63.08 |
| TraesCS5D01G156400.2 | Wheat | cytosol, mitochondrion, nucleus | 59.5 | 62.96 |
| CDX77159 | Canola | mitochondrion | 20.0 | 61.54 |
| CDY60020 | Canola | cytosol | 39.5 | 60.31 |
| Bra032836.1-P | Field mustard | mitochondrion | 37.5 | 57.69 |
| KXG22781 | Sorghum | plastid | 26.0 | 54.74 |
Protein Annotations
| MapMan:12.4.4.3 | ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006950 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009909 |
| GO:GO:0040007 | GO:GO:0042742 | GO:GO:0042802 | GO:GO:0046872 | GO:GO:0048638 | EnsemblPlantsGene:GSMUA_AchrUn_randomG13530_001 |
| EnsemblPlants:GSMUA_AchrUn_randomP13530_001 | EnsemblPlants:GSMUA_AchrUn_randomT13530_001 | InterPro:IPR007529 | UniProt:M0U8W2 | PFAM:PF04438 | PFscan:PS51083 |
| PANTHER:PTHR13093 | UniParc:UPI000296743A | InterPro:Znf_HIT | SEG:seg | : | : |
Description
HIT zinc finger domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG13530_001]
Coordinates
chrchrUn_random:-:64347545..64353637
Molecular Weight (calculated)
22521.6 Da
IEP (calculated)
8.941
GRAVY (calculated)
-0.814
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEENTGPFR RTSSRTKKIA AKMAAALAST DNRTQAALAR LESLENDNAG AENVEINDDD DASLDDDDQA YVQKKQAKNM KRKTRQAKAL ENAKKAPRTF
101: TELLQEANLE ALPPHVPSYL RAAVGPPSTS SRRHFCTVCG DAANYTCVRC GVRFCSCRCQ VIHNDTRCLK FYRIKNRERE TNMHEISVRL ANERLPTPKF
101: TELLQEANLE ALPPHVPSYL RAAVGPPSTS SRRHFCTVCG DAANYTCVRC GVRFCSCRCQ VIHNDTRCLK FYRIKNRERE TNMHEISVRL ANERLPTPKF
001: MEEEMSNRRV SNRTRKVATK MAAALTSNDN RTQAAIARLE ALENDNGAIE VIDLNDDEEA SLDEDDDLGY LQKKQHKGSK RKTRQAKALE ARKAPKSFLE
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A
Arabidopsis Description
SWC6SWR1 complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW2]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.