CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES14361
EES16499
EES16500
KXG22781
KXG27287
OQU79631
OQU85588

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37055.1	KXG27287	AT1G22920.1	21798944
AT5G37055.1	EES14361	AT2G36740.1	17470967
AT5G37055.1	OQU85588	AT3G12810.1	17142478
AT5G37055.1	OQU85588	AT3G12810.1	17470967
AT5G37055.1	OQU79631	AT3G33520.1	17142478
AT5G37055.1	OQU79631	AT3G33520.1	17470967
AT5G37055.1	EES16499	AT5G37055.1	17470967
AT5G37055.1	EES16500	AT5G37055.1	17470967
AT5G37055.1	KXG22781	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052325_P001	Maize	cytosol, nucleus, plastid	95.95	95.95
EES16499	Sorghum	mitochondrion	94.22	94.77
TraesCS5A01G151300.1	Wheat	cytosol, nucleus, plastid	93.64	93.64
TraesCS5B01G149800.2	Wheat	cytosol, nucleus, plastid	93.06	93.06
Os03t0367800-01	Rice	cytosol, mitochondrion, nucleus	93.06	92.0
HORVU5Hr1G047490.2	Barley	plastid	93.64	87.1
TraesCS5D01G156400.2	Wheat	cytosol, mitochondrion, nucleus	90.17	82.54
KXG22781	Sorghum	plastid	39.88	72.63
VIT_08s0007g08060.t01	Wine grape	mitochondrion	67.05	67.44
KRG98203	Soybean	nucleus	67.05	67.05
PGSC0003DMT400058037	Potato	nucleus	65.9	66.67
Solyc03g033480.2.1	Tomato	nucleus	65.9	66.67
CDY70943	Canola	nucleus	65.32	66.08
KRH30163	Soybean	nucleus	65.9	65.9
CDY32983	Canola	mitochondrion	64.74	65.5
Bra002649.1-P	Field mustard	mitochondrion	64.74	65.5
AT5G37055.1	Thale cress	mitochondrion	64.16	64.91
Bra006766.1-P	Field mustard	nucleus	64.16	64.91
CDY57389	Canola	mitochondrion	64.16	64.91
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	71.1	61.5
CDX99412	Canola	mitochondrion	21.97	58.46
CDY40293	Canola	mitochondrion	21.39	56.92
Bra031327.1-P	Field mustard	mitochondrion	21.39	56.92
CDY60020	Canola	cytosol	42.77	56.49
CDX99372	Canola	mitochondrion	20.81	55.38
CDX77159	Canola	mitochondrion	20.81	55.38
Bra032836.1-P	Field mustard	mitochondrion	37.57	50.0

Protein Annotations

MapMan:12.4.4.3	EntrezGene:8055505	UniProt:C5YQ50	ncoils:Coil	EnsemblPlants:EES16500	ProteinID:EES16500
ProteinID:EES16500.1	GO:GO:0000812	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0031063	GO:GO:0031491
GO:GO:0042826	GO:GO:0043486	GO:GO:0046872	InterPro:IPR007529	PFAM:PF04438	PFscan:PS51083
PANTHER:PTHR13093	EnsemblPlantsGene:SORBI_3008G007300	UniParc:UPI0001A88359	RefSeq:XP_002442662.1	InterPro:Znf_HIT	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:587710..589652

Molecular Weight (calculated)

19195.7 Da

IEP (calculated)

8.580

GRAVY (calculated)

-0.616

Length

173 amino acids

Sequence
(BLAST)

001: MDGEEENVGP FRRTSARTRR MASRMASALA SSDNRAQAAL ARLEALESDN AGVEVVDLND DEYGSTDEED PVLMQKKQSK IMKRKTRQGK ALEKRAARSF
101: MDVLQEANLE SLPPHVPTYL RAAVGPPSTS SRRHYCSVCG SSANYTCVRC GTRFCSCRCQ VIHNDTRCLK FVA

Best Arabidopsis Sequence Match ( AT5G37055.1 )
(BLAST)

001: MEEEMSNRRV SNRTRKVATK MAAALTSNDN RTQAAIARLE ALENDNGAIE VIDLNDDEEA SLDEDDDLGY LQKKQHKGSK RKTRQAKALE ARKAPKSFLE
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A

Arabidopsis Description

SWC6SWR1 complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.