Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G151300.1 | Wheat | cytosol, nucleus, plastid | 87.83 | 95.95 |
| TraesCS5B01G149800.2 | Wheat | cytosol, nucleus, plastid | 87.3 | 95.38 |
| EES16500 | Sorghum | cytosol, nucleus, plastid | 82.54 | 90.17 |
| HORVU5Hr1G047490.2 | Barley | plastid | 86.77 | 88.17 |
| Zm00001d052325_P001 | Maize | cytosol, nucleus, plastid | 78.84 | 86.13 |
| EES16499 | Sorghum | mitochondrion | 77.78 | 85.47 |
| Os03t0367800-01 | Rice | cytosol, mitochondrion, nucleus | 78.31 | 84.57 |
| KXG22781 | Sorghum | plastid | 32.28 | 64.21 |
| Solyc03g033480.2.1 | Tomato | nucleus | 57.67 | 63.74 |
| PGSC0003DMT400058037 | Potato | nucleus | 57.67 | 63.74 |
| KRG98203 | Soybean | nucleus | 58.2 | 63.58 |
| CDY70943 | Canola | nucleus | 56.61 | 62.57 |
| KRH30163 | Soybean | nucleus | 57.14 | 62.43 |
| VIT_08s0007g08060.t01 | Wine grape | mitochondrion | 56.61 | 62.21 |
| Bra002649.1-P | Field mustard | mitochondrion | 56.08 | 61.99 |
| CDY32983 | Canola | mitochondrion | 56.08 | 61.99 |
| CDY57389 | Canola | mitochondrion | 55.56 | 61.4 |
| Bra006766.1-P | Field mustard | nucleus | 55.56 | 61.4 |
| AT5G37055.1 | Thale cress | mitochondrion | 55.56 | 61.4 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus | 62.96 | 59.5 |
| CDX99412 | Canola | mitochondrion | 20.11 | 58.46 |
| Bra031327.1-P | Field mustard | mitochondrion | 19.58 | 56.92 |
| CDY40293 | Canola | mitochondrion | 19.58 | 56.92 |
| CDX77159 | Canola | mitochondrion | 19.05 | 55.38 |
| CDX99372 | Canola | mitochondrion | 19.05 | 55.38 |
| CDY60020 | Canola | cytosol | 35.98 | 51.91 |
| Bra032836.1-P | Field mustard | mitochondrion | 34.39 | 50.0 |
Protein Annotations
| MapMan:12.4.4.3 | ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006950 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009909 |
| GO:GO:0040007 | GO:GO:0042742 | GO:GO:0042802 | GO:GO:0048638 | InterPro:IPR007529 | PFAM:PF04438 |
| PFscan:PS51083 | PANTHER:PTHR13093 | SUPFAM:SSF144232 | EnsemblPlantsGene:TraesCS5D01G156400 | EnsemblPlants:TraesCS5D01G156400.2 | InterPro:Znf_HIT |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:244622558..244624642
Molecular Weight (calculated)
21220.2 Da
IEP (calculated)
8.865
GRAVY (calculated)
-0.674
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGEEENSGP FRRTSSRTRR MASRMASALS SSDNRAQAAL ARLDALESDN AGVEVVDLND DEYGSTDEED HVLMQKKQSK NMKRKTRQGK ALEKRAVRSF
101: MDALQEANLE ALPPHVPTYL RAAVGPPSTS SRRHYCSVCG NSSNYTCPRC GTRFCSCRCQ VIHNDTRCPV GMWRLMICAF IRKKCLLYS
101: MDALQEANLE ALPPHVPTYL RAAVGPPSTS SRRHYCSVCG NSSNYTCPRC GTRFCSCRCQ VIHNDTRCPV GMWRLMICAF IRKKCLLYS
001: MEEEMSNRRV SNRTRKVATK MAAALTSNDN RTQAAIARLE ALENDNGAIE VIDLNDDEEA SLDEDDDLGY LQKKQHKGSK RKTRQAKALE ARKAPKSFLE
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A
Arabidopsis Description
SWC6SWR1 complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW2]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.