Factsheet for TraesCS7B01G228400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G132400.1
TraesCS1B01G154500.1
TraesCS2D01G571800.1
TraesCS5A01G151300.1
TraesCS5B01G149800.2
TraesCS5D01G156400.2
TraesCS7D01G246600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36740.1	TraesCS1A01G132400.1	AT3G54560.1	17470967
AT2G36740.1	TraesCS1B01G154500.1	AT3G54560.1	17470967
AT2G36740.1	TraesCS2D01G571800.1	AT3G54560.1	17470967
AT2G36740.1	TraesCS7D01G246600.1	AT3G54560.1	17470967
AT2G36740.1	TraesCS5A01G151300.1	AT5G37055.1	17470967
AT2G36740.1	TraesCS5B01G149800.2	AT5G37055.1	17470967
AT2G36740.1	TraesCS5D01G156400.2	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G324500.1	Wheat	nucleus	94.54	94.54
TraesCS7A01G327700.1	Wheat	nucleus	93.99	93.99
HORVU7Hr1G078440.9	Barley	nucleus	92.08	83.42
Os08t0192400-00	Rice	nucleus	76.5	77.56
EES14361	Sorghum	nucleus	74.32	75.56
Zm00001d035012_P002	Maize	nucleus	71.58	71.58
GSMUA_AchrUn_...	Banana	nucleus	48.09	64.94
VIT_16s0039g02650.t01	Wine grape	nucleus	49.18	59.8
KRH58568	Soybean	nucleus	54.64	56.34
Solyc04g009830.2.1	Tomato	nucleus	53.83	54.72
CDY33188	Canola	nucleus	54.1	54.4
CDX75016	Canola	nucleus	53.83	53.83
AT2G36740.1	Thale cress	nucleus	53.55	53.7
PGSC0003DMT400065423	Potato	nucleus	52.19	50.26

Protein Annotations

MapMan:12.4.4.2	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006338	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0043486	PFAM:PF05764	PFAM:PF08265	PANTHER:PTHR13275
SMART:SM00993	EnsemblPlantsGene:TraesCS7B01G228400	EnsemblPlants:TraesCS7B01G228400.1	InterPro:Vps72/YL1	InterPro:Vps72/YL1_C	SEG:seg

Description

No Description!

Coordinates

chr7B:-:428837136..428840286

Molecular Weight (calculated)

39983.1 Da

IEP (calculated)

5.525

GRAVY (calculated)

-1.078

Length

366 amino acids

Sequence
(BLAST)

001: MADHAADEEE PPVLLDRAAR ATRGKRXXXX XXXXXXXXXX XXGQEALKED EEDDNYQEEQ DAGDVFDSDF DEDEPQPDDD PEKEVSERLP IKKRLFFPGK
101: TMKKMKAKKK KKKNKVIKLE DDEGIDDKNP DKTTSSKQSD VPDEWESEKT IRKSTRTSVI VRQAEREAIR AEKQATAKPI KKRKEGEEKR MTQEEMLLEA
201: AETEIMNMRN LERVLAREEE VKKKAVVQKA VYEGPTLRFH SRDGESRLEF INGASFGSEL CTTSTPYPEK SVCVVTGLPA KYRDPKTGLP YATMAAFKII
301: RESFLKEESD KKRPNMSNMG ELFESVAGEH STPKKKRIES RSPISGDLRH GGRFRRIPAL DVMDED

Best Arabidopsis Sequence Match ( AT2G36740.1 )
(BLAST)

001: MEIDEEEPMV FLDRTTRATR GKRMTKLLDD EVEEDEQFWN QEALKEEEHD DEYEAEREVA DEFDSDFNDD EPEPDAVAVN EKELRDLPKK RLIYPGKTAS
101: KKKKKKTKVV SQLEYIPGDE KPGEELGNKE QEEKEENEAQ EDMEGEKVIR KSTRTSVVVR QAERDALRAA IQATTKPIQR KKVGEEKRMT QEEMLLEAAQ
201: TEIMNLRNLE RVLAREEEVK KKAIVHKAVY KGPQIRYHSK DGCNYLEFCN GASFNSELST KSVPYPEKAV CVITGLPAKY RDPKTGLPYA TRDAFKAIRE
301: RFMDEHDGLR KKMEMGDLFD TLVAKGFATK QKRTKIPKSN KSFSLRSSAR FLSSESEEES EEDSD

Arabidopsis Description

SWC2SWR1 complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IP06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.