Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75016 | Canola | nucleus | 96.43 | 95.9 |
| AT2G36740.1 | Thale cress | nucleus | 82.14 | 81.92 |
| GSMUA_AchrUn_... | Banana | nucleus | 52.47 | 70.48 |
| VIT_16s0039g02650.t01 | Wine grape | nucleus | 55.77 | 67.44 |
| KRH58568 | Soybean | nucleus | 59.89 | 61.41 |
| Solyc04g009830.2.1 | Tomato | nucleus | 59.89 | 60.56 |
| EES14361 | Sorghum | nucleus | 57.14 | 57.78 |
| Os08t0192400-00 | Rice | nucleus | 56.59 | 57.06 |
| TraesCS7D01G324500.1 | Wheat | nucleus | 57.14 | 56.83 |
| PGSC0003DMT400065423 | Potato | nucleus | 58.79 | 56.32 |
| TraesCS7A01G327700.1 | Wheat | nucleus | 56.32 | 56.01 |
| Zm00001d035012_P002 | Maize | nucleus | 54.95 | 54.64 |
| TraesCS7B01G228400.1 | Wheat | nucleus | 54.4 | 54.1 |
| HORVU7Hr1G078440.9 | Barley | nucleus | 56.04 | 50.49 |
Protein Annotations
| MapMan:12.4.4.2 | GO:A0A078H8K6 | UniProt:A0A078H8K6 | EnsemblPlants:CDY33188 | ProteinID:CDY33188 | ProteinID:CDY33188.1 |
| ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006338 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0043486 | EnsemblPlantsGene:GSBRNA2T00053915001 | PFAM:PF05764 | PFAM:PF08265 | PANTHER:PTHR13275 |
| SMART:SM00993 | UniParc:UPI0004EC75A0 | InterPro:Vps72/YL1 | InterPro:Vps72/YL1_C | SEG:seg | : |
Description
BnaC04g08510DBnaC04g08510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8K6]
Coordinates
chrLK032308:-:221487..224097
Molecular Weight (calculated)
41824.8 Da
IEP (calculated)
4.636
GRAVY (calculated)
-1.058
Length
364 amino acids
Sequence
(BLAST)
(BLAST)
001: MESDKEEQMV FLDRTTRATR GKRMTKLVDD EVEEDEQFWN QEALKEEEHD DNYEAEAEVA DEFDSDFNDD EPEPEAVAEN EKEERDVPKK RLIYPGKTAP
101: KKNKKKKLVS KLEDTPEDEE TGDKEEDEKE PNETQEDMES EKVIRKSTRT SVIVRQAERD ALRAAIQATT KPIIRKKVGE EKRMTQEEML LEAAQTEIMN
201: LRNLERVLAR EEEVKKKAIV HKDVYNGPQV RFLSKDGCNY LEFCNGASFS SEISTKSVPY PEKAVCVITG LPAKYRDPKT GLAYATLDAF KAIRERFMDE
301: HNGLRKKMEM GDLFETLTAA NGFSAKRKRT MVPKTSRSFS LRSSARFCNL ETPEASEDSE SDSD
101: KKNKKKKLVS KLEDTPEDEE TGDKEEDEKE PNETQEDMES EKVIRKSTRT SVIVRQAERD ALRAAIQATT KPIIRKKVGE EKRMTQEEML LEAAQTEIMN
201: LRNLERVLAR EEEVKKKAIV HKDVYNGPQV RFLSKDGCNY LEFCNGASFS SEISTKSVPY PEKAVCVITG LPAKYRDPKT GLAYATLDAF KAIRERFMDE
301: HNGLRKKMEM GDLFETLTAA NGFSAKRKRT MVPKTSRSFS LRSSARFCNL ETPEASEDSE SDSD
001: MEIDEEEPMV FLDRTTRATR GKRMTKLLDD EVEEDEQFWN QEALKEEEHD DEYEAEREVA DEFDSDFNDD EPEPDAVAVN EKELRDLPKK RLIYPGKTAS
101: KKKKKKTKVV SQLEYIPGDE KPGEELGNKE QEEKEENEAQ EDMEGEKVIR KSTRTSVVVR QAERDALRAA IQATTKPIQR KKVGEEKRMT QEEMLLEAAQ
201: TEIMNLRNLE RVLAREEEVK KKAIVHKAVY KGPQIRYHSK DGCNYLEFCN GASFNSELST KSVPYPEKAV CVITGLPAKY RDPKTGLPYA TRDAFKAIRE
301: RFMDEHDGLR KKMEMGDLFD TLVAKGFATK QKRTKIPKSN KSFSLRSSAR FLSSESEEES EEDSD
101: KKKKKKTKVV SQLEYIPGDE KPGEELGNKE QEEKEENEAQ EDMEGEKVIR KSTRTSVVVR QAERDALRAA IQATTKPIQR KKVGEEKRMT QEEMLLEAAQ
201: TEIMNLRNLE RVLAREEEVK KKAIVHKAVY KGPQIRYHSK DGCNYLEFCN GASFNSELST KSVPYPEKAV CVITGLPAKY RDPKTGLPYA TRDAFKAIRE
301: RFMDEHDGLR KKMEMGDLFD TLVAKGFATK QKRTKIPKSN KSFSLRSSAR FLSSESEEES EEDSD
Arabidopsis Description
SWC2SWR1 complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IP06]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.