Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030365.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY62164 | Canola | nucleus | 92.59 | 100.0 |
| CDY61820 | Canola | nucleus | 100.0 | 100.0 |
| CDY62197 | Canola | nucleus | 99.26 | 99.26 |
| CDY47568 | Canola | nucleus | 99.26 | 99.26 |
| AT1G52740.1 | Thale cress | nucleus | 97.04 | 97.76 |
| CDY21851 | Canola | nucleus | 91.85 | 92.54 |
| VIT_04s0008g04700.t01 | Wine grape | nucleus | 86.67 | 87.31 |
| KRH52500 | Soybean | nucleus | 86.67 | 86.03 |
| GSMUA_Achr10P... | Banana | nucleus | 85.93 | 85.29 |
| Solyc12g006830.1.1 | Tomato | nucleus | 85.19 | 85.19 |
| PGSC0003DMT400002745 | Potato | nucleus | 85.19 | 85.19 |
| CDX78246 | Canola | cytosol | 85.19 | 84.56 |
| CDY57201 | Canola | nucleus | 75.56 | 83.61 |
| CDY07697 | Canola | mitochondrion | 80.74 | 81.34 |
| CDY14429 | Canola | plastid | 80.0 | 80.6 |
| CDX67603 | Canola | nucleus | 82.22 | 80.43 |
| CDY07535 | Canola | nucleus | 82.22 | 80.43 |
| CDX99552 | Canola | plastid | 69.63 | 74.6 |
| CDY13216 | Canola | mitochondrion | 81.48 | 58.82 |
| CDX73471 | Canola | plastid | 85.19 | 55.29 |
| CDY21852 | Canola | nucleus | 82.96 | 54.37 |
| CDY22659 | Canola | nucleus, plastid | 48.89 | 45.83 |
| CDY23443 | Canola | mitochondrion | 37.78 | 42.5 |
| CDY11491 | Canola | mitochondrion | 24.44 | 38.37 |
| CDY51246 | Canola | plastid | 34.81 | 21.36 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | GO:A0A078HR28 | UniProt:A0A078HR28 | EnsemblPlants:CDY40131 | ProteinID:CDY40131 |
| ProteinID:CDY40131.1 | ProteinID:CDY61820.1 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005694 | GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00069057001 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 |
| InterPro:Histone_H2A_C | InterPro:Histone_H2A_CS | InterPro:IPR009072 | PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 |
| ScanProsite:PS00046 | PANTHER:PTHR23430 | PANTHER:PTHR23430:SF55 | SMART:SM00414 | SUPFAM:SSF47113 | UniParc:UPI0001B63CFF |
Description
BnaC06g05580DHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A078HR28]
Coordinates
chrLK032464:-:15682..17242
Molecular Weight (calculated)
14398.7 Da
IEP (calculated)
11.014
GRAVY (calculated)
-0.345
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGKGAKGLI MGKPSGSEKD KDKKKQPITR SARAGLQFPV GRVHRLLKTR STAHGRVGAT AAVYTAAILE YLTAEVLELA GNASKDLKVK RISPRHLQLA
101: IRGDEELDTL IKGTIAGGGV IPHIHKSLIN KSAKE
101: IRGDEELDTL IKGTIAGGGV IPHIHKSLIN KSAKE
001: MSGKGAKGLI MGKPSGSDKD KDKKKPITRS SRAGLQFPVG RVHRLLKTRS TAHGRVGATA AVYTAAILEY LTAEVLELAG NASKDLKVKR ISPRHLQLAI
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SAKE
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SAKE
Arabidopsis Description
HTA9Probable histone H2A variant 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C944]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.