CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G043840.1	Barley	mitochondrion	58.14	69.44
CDY23443	Canola	mitochondrion	72.09	51.67
Bra029498.1-P	Field mustard	mitochondrion	70.93	50.83
Solyc05g014880.1.1	Tomato	nucleus	44.19	43.18
KRH27119	Soybean	nucleus	66.28	42.22
TraesCS2B01G239700.1	Wheat	mitochondrion	63.95	40.74
TraesCS2A01G214700.1	Wheat	mitochondrion	63.95	40.74
HORVU2Hr1G043860.1	Barley	nucleus	62.79	40.0
PGSC0003DMT400089480	Potato	nucleus	55.81	35.29
PGSC0003DMT400094846	Potato	mitochondrion, nucleus	52.33	33.09
PGSC0003DMT400091186	Potato	mitochondrion	51.16	32.35
HORVU6Hr1G003750.1	Barley	nucleus	47.67	32.03
Solyc05g014800.1.1	Tomato	nucleus	50.0	31.85
CDY22659	Canola	nucleus, plastid	51.16	30.56
PGSC0003DMT400095704	Potato	mitochondrion	47.67	29.93
Solyc05g014860.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	45.35	29.77
Solyc05g014890.1.1	Tomato	mitochondrion	46.51	29.63
CDY07697	Canola	mitochondrion	41.86	26.87
CDY21851	Canola	nucleus	41.86	26.87
CDY14429	Canola	plastid	41.86	26.87
CDX67603	Canola	nucleus	40.7	25.36
CDY07535	Canola	nucleus	40.7	25.36
CDX78246	Canola	cytosol	39.53	25.0
PGSC0003DMT400087364	Potato	mitochondrion	39.53	25.0
PGSC0003DMT400090970	Potato	nucleus	38.37	24.63
CDY57201	Canola	nucleus	34.88	24.59
CDY61820	Canola	nucleus	38.37	24.44
CDY40131	Canola	nucleus	38.37	24.44
CDY47568	Canola	nucleus	38.37	24.44
CDY62197	Canola	nucleus	38.37	24.44
CDY62164	Canola	nucleus	34.88	24.0
Solyc05g014810.1.1	Tomato	mitochondrion	40.7	23.18
Solyc05g014870.1.1	Tomato	nucleus	26.74	21.9
Solyc05g014850.1.1	Tomato	cytosol, nucleus, peroxisome, plastid	43.02	21.14
Solyc05g014940.1.1	Tomato	nucleus	34.88	20.98
GSMUA_Achr2P01530_001	Banana	endoplasmic reticulum, plasma membrane	25.58	20.75
PGSC0003DMT400094421	Potato	endoplasmic reticulum, mitochondrion	29.07	19.53
CDX99552	Canola	plastid	26.74	18.25
CDY13216	Canola	mitochondrion	39.53	18.18
CDY21852	Canola	nucleus	41.86	17.48
PGSC0003DMT400088887	Potato	endoplasmic reticulum, extracellular	23.26	16.81
CDX73471	Canola	plastid	39.53	16.35
PGSC0003DMT400086553	Potato	endoplasmic reticulum, extracellular	23.26	16.13
PGSC0003DMT400094311	Potato	extracellular	19.77	14.66
Solyc05g014830.1.1	Tomato	nucleus	38.37	11.3
CDY51246	Canola	plastid	13.95	5.45

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.2	GO:A0A078FDW0	UniProt:A0A078FDW0	EnsemblPlants:CDY11491	ProteinID:CDY11491
ProteinID:CDY11491.1	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0016020	GO:GO:0016021	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00049570001	InterPro:Histone-fold	InterPro:Histone_H2A
InterPro:Histone_H2A_CS	InterPro:IPR009072	ScanProsite:PS00046	PANTHER:PTHR23430	PANTHER:PTHR23430:SF195	SMART:SM00414
SUPFAM:SSF47113	TMHMM:TMhelix	UniParc:UPI0004EF4DAA	SEG:seg	:	:

Description

BnaA09g40570DBnaA09g40570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDW0]

Coordinates

chrLK032011:+:674006..674744

Molecular Weight (calculated)

9320.5 Da

IEP (calculated)

11.582

GRAVY (calculated)

0.058

Length

86 amino acids

Sequence
(BLAST)

1: MAGRGKTLGS RVAKKATSRS SKAGLQFPVG RIARYLKNCK YAFAGAPVYL AAVLAYLAAE ILYIYTLAAG IASRRRVSYR RNHPVA

Best Arabidopsis Sequence Match ( AT3G20670.1 )
(BLAST)

001: MAGRGKTLGS GVAKKSTSRS SKAGLQFPVG RIARFLKNGK YATRVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHSLLLPK KAGASKPSAD ED

Arabidopsis Description

HTA13Probable histone H2A.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHQ5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.