CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000097.1-P	Field mustard	mitochondrion	100.0	100.0
CDY14429	Canola	plastid	98.51	98.51
AT2G38810.3	Thale cress	mitochondrion	93.28	91.91
CDX78246	Canola	cytosol	90.3	88.97
GSMUA_Achr1P04720_001	Banana	nucleus	88.81	88.81
CDY57201	Canola	nucleus	80.6	88.52
PGSC0003DMT400051893	Potato	extracellular	89.55	87.59
GSMUA_Achr8P26920_001	Banana	nucleus	87.31	87.31
GSMUA_Achr1P27260_001	Banana	nucleus	87.31	87.31
VIT_00s0179g00340.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	86.57	87.22
CDY07535	Canola	nucleus	89.55	86.96
CDX67603	Canola	nucleus	89.55	86.96
GSMUA_Achr8P04480_001	Banana	nucleus	86.57	86.57
Os10t0418000-01	Rice	nucleus	89.55	86.33
GSMUA_Achr3P15210_001	Banana	nucleus	85.82	85.82
KRH71352	Soybean	mitochondrion	86.57	85.29
KRH67280	Soybean	cytosol, mitochondrion, nucleus, plastid	86.57	85.29
KRH32088	Soybean	nucleus	86.57	85.29
KRG95601	Soybean	cytosol, mitochondrion, nucleus, plastid	86.57	85.29
TraesCS1A01G132400.1	Wheat	mitochondrion	88.06	84.89
TraesCS1B01G154500.1	Wheat	mitochondrion	88.06	84.89
TraesCS7D01G246600.1	Wheat	mitochondrion	88.06	84.89
Os03t0162200-01	Rice	nucleus	86.57	84.06
Zm00001d027760_P001	Maize	plastid	86.57	84.06
EES07107	Sorghum	mitochondrion	86.57	84.06
Zm00001d033979_P001	Maize	mitochondrion, nucleus	85.82	83.94
Zm00001d013300_P001	Maize	mitochondrion, nucleus	85.82	83.94
PGSC0003DMT400049686	Potato	nucleus	86.57	83.45
Os03t0743400-01	Rice	nucleus	85.07	83.21
KXG28801	Sorghum	nucleus	81.34	81.95
CDY21851	Canola	nucleus	81.34	81.34
CDY62164	Canola	nucleus	75.37	80.8
CDY62197	Canola	nucleus	81.34	80.74
CDY61820	Canola	nucleus	81.34	80.74
CDY47568	Canola	nucleus	81.34	80.74
CDY40131	Canola	nucleus	81.34	80.74
KXG40126	Sorghum	nucleus	76.12	76.69
Zm00001d007567_P001	Maize	nucleus	68.66	69.7
CDX99552	Canola	plastid	64.18	68.25
CDY13216	Canola	mitochondrion	89.55	64.17
Solyc06g084090.2.1	Tomato	nucleus	89.55	59.11
CDX73471	Canola	plastid	90.3	58.17
TraesCS2D01G571800.1	Wheat	mitochondrion, nucleus, plastid	50.75	56.67
GSMUA_Achr6P23340_001	Banana	mitochondrion	86.57	50.43
CDY21852	Canola	nucleus	74.63	48.54
Zm00001d007553_P001	Maize	nucleus	67.91	47.89
CDY22659	Canola	nucleus, plastid	50.0	46.53
CDY23443	Canola	mitochondrion	40.3	45.0
CDY11491	Canola	mitochondrion	26.87	41.86
CDY51246	Canola	plastid	34.33	20.91

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.2	GO:A0A078F3P4	UniProt:A0A078F3P4	EnsemblPlants:CDY07697	ProteinID:CDY07697
ProteinID:CDY07697.1	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00124811001	InterPro:Histone-fold	InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2A_C
InterPro:IPR009072	PFAM:PF00125	PFAM:PF16211	PRINTS:PR00620	PANTHER:PTHR23430	PANTHER:PTHR23430:SF211
SMART:SM00414	SUPFAM:SSF47113	UniParc:UPI0001B63D08	SEG:seg	:	:

Description

BnaA03g18140DHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A078F3P4]

Coordinates

chrLK031980:+:534991..536149

Molecular Weight (calculated)

14231.4 Da

IEP (calculated)

11.163

GRAVY (calculated)

-0.237

Length

134 amino acids

Sequence
(BLAST)

001: MAGKGGKGLI ATKTTTTAAN KDKKKSISRS SRAGIQFPVG RIHRQLKTRV SAHGRVGATA AVYTASILEY LTAEVLELAG NASKDLKVKR ITPRHLQLAI
101: RGDEELDTLI KGTIAGGGVI PHIHKSLVNK IANE

Best Arabidopsis Sequence Match ( AT2G38810.2 )
(BLAST)

001: MAGKGGKGLL AAKTTAAAAN KDSVKKKSIS RSSRAGIQFP VGRIHRQLKQ RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLV NKVTKD

Arabidopsis Description

HTA8Probable histone H2A variant 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SII0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.