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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 1
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
EES14361
OQU85588

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os03t0162200-01 Rice nucleus 87.22 84.06
EES07107 Sorghum mitochondrion 87.22 84.06
GSMUA_Achr8P26920_001 Banana nucleus 82.71 82.09
GSMUA_Achr3P15210_001 Banana nucleus 82.71 82.09
GSMUA_Achr8P04480_001 Banana nucleus 81.95 81.34
GSMUA_Achr1P04720_001 Banana nucleus 81.95 81.34
GSMUA_Achr1P27260_001 Banana nucleus 81.2 80.6
PGSC0003DMT400051893 Potato extracellular 81.95 79.56
AT3G54560.1 Thale cress cytosol 81.2 79.41
PGSC0003DMT400049686 Potato nucleus 82.71 79.14
KRH71352 Soybean mitochondrion 80.45 78.68
KRH32088 Soybean nucleus 80.45 78.68
CDX67603 Canola nucleus 81.2 78.26
Bra003188.1-P Field mustard nucleus 81.2 78.26
CDY07535 Canola nucleus 81.2 78.26
VIT_00s0179g00340.t01 Wine grape cytosol, mitochondrion, nucleus, plastid 77.44 77.44
KXG28801 Sorghum nucleus 77.44 77.44
Bra007080.1-P Field mustard cytosol 78.95 77.21
KRH67280 Soybean cytosol, mitochondrion, nucleus, plastid 78.95 77.21
KRG95601 Soybean cytosol, mitochondrion, nucleus, plastid 78.95 77.21
Bra014808.1-P Field mustard mitochondrion 78.95 77.21
CDX78246 Canola cytosol 78.95 77.21
CDY57201 Canola nucleus 70.68 77.05
CDY14429 Canola plastid 76.69 76.12
Bra000097.1-P Field mustard mitochondrion 76.69 76.12
CDY07697 Canola mitochondrion 76.69 76.12
AT2G38810.3 Thale cress mitochondrion 77.44 75.74
EES08219 Sorghum cytosol 49.62 61.68
CDY13216 Canola mitochondrion 78.95 56.15
Solyc06g084090.2.1 Tomato nucleus 81.95 53.69
CDX73471 Canola plastid 78.95 50.48
GSMUA_Achr6P23340_001 Banana mitochondrion 81.2 46.96
Protein Annotations
Gene3D:1.10.20.10MapMan:12.1.2UniProt:A0A1B6QQC9GO:GO:0000786GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0005694GO:GO:0046982InterPro:Histone-foldInterPro:Histone_H2AInterPro:Histone_H2A/H2B/H3
InterPro:Histone_H2A_CInterPro:Histone_H2A_CSInterPro:IPR009072EnsemblPlants:KXG40126ProteinID:KXG40126ProteinID:KXG40126.1
PFAM:PF00125PFAM:PF16211PRINTS:PR00620ScanProsite:PS00046PANTHER:PTHR23430PANTHER:PTHR23430:SF105
SMART:SM00414EnsemblPlantsGene:SORBI_3001G495700SUPFAM:SSF47113UniParc:UPI00081AE84BSEG:seg:
Description
hypothetical protein
Coordinates
chr1:-:76534892..76535822
Molecular Weight (calculated)
14286.5 Da
IEP (calculated)
10.669
GRAVY (calculated)
-0.232
Length
133 amino acids
Sequence
(BLAST)
001: MAGKGGMGLP AAKSTDKDKD KKKAPMSRSF RAGLQFPVGR IHRQLKSHAF AHGRVGATAV VYSAAILEYL TAEVLEVAGN ATKDLNLKRI TPRHLQLAIR
101: GDEELDTLIK ATIAGGGVIP YIHQSLINKT AKE
Best Arabidopsis Sequence Match ( AT3G54560.1 )
(BLAST)
001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
Arabidopsis Description
H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.