Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G54560.1 | EES14361 | AT2G36740.1 | 17470967 |
AT3G54560.1 | OQU85588 | AT3G12810.1 | 17470967 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Os03t0162200-01 | Rice | nucleus | 87.22 | 84.06 |
EES07107 | Sorghum | mitochondrion | 87.22 | 84.06 |
GSMUA_Achr8P26920_001 | Banana | nucleus | 82.71 | 82.09 |
GSMUA_Achr3P15210_001 | Banana | nucleus | 82.71 | 82.09 |
GSMUA_Achr8P04480_001 | Banana | nucleus | 81.95 | 81.34 |
GSMUA_Achr1P04720_001 | Banana | nucleus | 81.95 | 81.34 |
GSMUA_Achr1P27260_001 | Banana | nucleus | 81.2 | 80.6 |
PGSC0003DMT400051893 | Potato | extracellular | 81.95 | 79.56 |
AT3G54560.1 | Thale cress | cytosol | 81.2 | 79.41 |
PGSC0003DMT400049686 | Potato | nucleus | 82.71 | 79.14 |
KRH71352 | Soybean | mitochondrion | 80.45 | 78.68 |
KRH32088 | Soybean | nucleus | 80.45 | 78.68 |
CDX67603 | Canola | nucleus | 81.2 | 78.26 |
Bra003188.1-P | Field mustard | nucleus | 81.2 | 78.26 |
CDY07535 | Canola | nucleus | 81.2 | 78.26 |
VIT_00s0179g00340.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 77.44 | 77.44 |
KXG28801 | Sorghum | nucleus | 77.44 | 77.44 |
Bra007080.1-P | Field mustard | cytosol | 78.95 | 77.21 |
KRH67280 | Soybean | cytosol, mitochondrion, nucleus, plastid | 78.95 | 77.21 |
KRG95601 | Soybean | cytosol, mitochondrion, nucleus, plastid | 78.95 | 77.21 |
Bra014808.1-P | Field mustard | mitochondrion | 78.95 | 77.21 |
CDX78246 | Canola | cytosol | 78.95 | 77.21 |
CDY57201 | Canola | nucleus | 70.68 | 77.05 |
CDY14429 | Canola | plastid | 76.69 | 76.12 |
Bra000097.1-P | Field mustard | mitochondrion | 76.69 | 76.12 |
CDY07697 | Canola | mitochondrion | 76.69 | 76.12 |
AT2G38810.3 | Thale cress | mitochondrion | 77.44 | 75.74 |
EES08219 | Sorghum | cytosol | 49.62 | 61.68 |
CDY13216 | Canola | mitochondrion | 78.95 | 56.15 |
Solyc06g084090.2.1 | Tomato | nucleus | 81.95 | 53.69 |
CDX73471 | Canola | plastid | 78.95 | 50.48 |
GSMUA_Achr6P23340_001 | Banana | mitochondrion | 81.2 | 46.96 |
Protein Annotations
Gene3D:1.10.20.10 | MapMan:12.1.2 | UniProt:A0A1B6QQC9 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005634 | GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 |
InterPro:Histone_H2A_C | InterPro:Histone_H2A_CS | InterPro:IPR009072 | EnsemblPlants:KXG40126 | ProteinID:KXG40126 | ProteinID:KXG40126.1 |
PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 | ScanProsite:PS00046 | PANTHER:PTHR23430 | PANTHER:PTHR23430:SF105 |
SMART:SM00414 | EnsemblPlantsGene:SORBI_3001G495700 | SUPFAM:SSF47113 | UniParc:UPI00081AE84B | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr1:-:76534892..76535822
Molecular Weight (calculated)
14286.5 Da
IEP (calculated)
10.669
GRAVY (calculated)
-0.232
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKGGMGLP AAKSTDKDKD KKKAPMSRSF RAGLQFPVGR IHRQLKSHAF AHGRVGATAV VYSAAILEYL TAEVLEVAGN ATKDLNLKRI TPRHLQLAIR
101: GDEELDTLIK ATIAGGGVIP YIHQSLINKT AKE
101: GDEELDTLIK ATIAGGGVIP YIHQSLINKT AKE
001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
Arabidopsis Description
H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.