Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 4
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra034727.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54560.1 | Bra034727.1-P | AT3G12810.1 | 17470967 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY57201 | Canola | nucleus | 89.71 | 100.0 |
| AT3G54560.1 | Thale cress | cytosol | 97.79 | 97.79 |
| Bra003188.1-P | Field mustard | nucleus | 97.79 | 96.38 |
| Bra007080.1-P | Field mustard | cytosol | 93.38 | 93.38 |
| VIT_00s0179g00340.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 88.24 | 90.23 |
| Bra000097.1-P | Field mustard | mitochondrion | 88.24 | 89.55 |
| PGSC0003DMT400051893 | Potato | extracellular | 88.97 | 88.32 |
| KRH71352 | Soybean | mitochondrion | 88.24 | 88.24 |
| KRH32088 | Soybean | nucleus | 88.24 | 88.24 |
| GSMUA_Achr1P04720_001 | Banana | nucleus | 86.76 | 88.06 |
| Os10t0418000-01 | Rice | nucleus | 89.71 | 87.77 |
| KRG95601 | Soybean | cytosol, mitochondrion, nucleus, plastid | 87.5 | 87.5 |
| KRH67280 | Soybean | cytosol, mitochondrion, nucleus, plastid | 87.5 | 87.5 |
| GSMUA_Achr8P26920_001 | Banana | nucleus | 86.03 | 87.31 |
| TraesCS7D01G246600.1 | Wheat | mitochondrion | 88.97 | 87.05 |
| TraesCS1B01G154500.1 | Wheat | mitochondrion | 88.97 | 87.05 |
| TraesCS1A01G132400.1 | Wheat | mitochondrion | 88.97 | 87.05 |
| GSMUA_Achr1P27260_001 | Banana | nucleus | 85.29 | 86.57 |
| GSMUA_Achr3P15210_001 | Banana | nucleus | 85.29 | 86.57 |
| GSMUA_Achr8P04480_001 | Banana | nucleus | 85.29 | 86.57 |
| EES07107 | Sorghum | mitochondrion | 87.5 | 86.23 |
| Zm00001d027760_P001 | Maize | plastid | 87.5 | 86.23 |
| Os03t0162200-01 | Rice | nucleus | 87.5 | 86.23 |
| Zm00001d033979_P001 | Maize | mitochondrion, nucleus | 86.03 | 85.4 |
| Zm00001d013300_P001 | Maize | mitochondrion, nucleus | 86.03 | 85.4 |
| Os03t0743400-01 | Rice | nucleus | 85.29 | 84.67 |
| PGSC0003DMT400049686 | Potato | nucleus | 86.03 | 84.17 |
| KXG28801 | Sorghum | nucleus | 81.62 | 83.46 |
| Bra018984.1-P | Field mustard | nucleus | 80.88 | 81.48 |
| Bra030365.1-P | Field mustard | nucleus | 80.88 | 81.48 |
| KXG40126 | Sorghum | nucleus | 77.21 | 78.95 |
| Zm00001d007567_P001 | Maize | nucleus | 72.06 | 74.24 |
| CDY13216 | Canola | mitochondrion | 100.0 | 72.73 |
| Solyc06g084090.2.1 | Tomato | nucleus | 88.97 | 59.61 |
| TraesCS2D01G571800.1 | Wheat | mitochondrion, nucleus, plastid | 49.26 | 55.83 |
| Zm00001d007553_P001 | Maize | nucleus | 70.59 | 50.53 |
| GSMUA_Achr6P23340_001 | Banana | mitochondrion | 84.56 | 50.0 |
| Bra029498.1-P | Field mustard | mitochondrion | 37.5 | 42.5 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | EnsemblPlantsGene:Bra014808 | EnsemblPlants:Bra014808.1 | EnsemblPlants:Bra014808.1-P | GO:GO:0000786 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0005730 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010468 | GO:GO:0044030 |
| GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C | InterPro:IPR009072 |
| UniProt:M4DE87 | PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 | PANTHER:PTHR23430 | PANTHER:PTHR23430:SF211 |
| SMART:SM00414 | SUPFAM:SSF47113 | UniParc:UPI000189DA54 | SEG:seg | : | : |
Description
AT3G54560 (E=2e-062) HTA11 | HTA11; DNA binding
Coordinates
chrA04:+:3294645..3296248
Molecular Weight (calculated)
14472.8 Da
IEP (calculated)
11.083
GRAVY (calculated)
-0.272
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKGGKGLV AAKTMAANKD KDKGKMKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTNE
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTNE
001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
Arabidopsis Description
H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.