Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d017660_P021 | |
| Zm00001d035012_P002 | |
| Zm00001d051507_P007 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54560.1 | Zm00001d035012_P002 | AT2G36740.1 | 17470967 |
| AT3G54560.1 | Zm00001d017660_P021 | AT3G12810.1 | 17470967 |
| AT3G54560.1 | Zm00001d051507_P007 | AT3G12810.1 | 17470967 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013300_P001 | Maize | mitochondrion, nucleus | 100.0 | 100.0 |
| Os03t0743400-01 | Rice | nucleus | 99.27 | 99.27 |
| GSMUA_Achr8P26920_001 | Banana | nucleus | 92.7 | 94.78 |
| GSMUA_Achr8P04480_001 | Banana | nucleus | 91.97 | 94.03 |
| GSMUA_Achr3P15210_001 | Banana | nucleus | 91.24 | 93.28 |
| GSMUA_Achr1P04720_001 | Banana | nucleus | 91.24 | 93.28 |
| Zm00001d027760_P001 | Maize | plastid | 92.7 | 92.03 |
| GSMUA_Achr1P27260_001 | Banana | nucleus | 89.78 | 91.79 |
| PGSC0003DMT400051893 | Potato | extracellular | 90.51 | 90.51 |
| KRH71352 | Soybean | mitochondrion | 89.78 | 90.44 |
| KRH32088 | Soybean | nucleus | 89.78 | 90.44 |
| PGSC0003DMT400049686 | Potato | nucleus | 90.51 | 89.21 |
| KRG95601 | Soybean | cytosol, mitochondrion, nucleus, plastid | 88.32 | 88.97 |
| KRH67280 | Soybean | cytosol, mitochondrion, nucleus, plastid | 88.32 | 88.97 |
| AT2G38810.3 | Thale cress | mitochondrion | 86.86 | 87.5 |
| VIT_00s0179g00340.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 84.67 | 87.22 |
| AT3G54560.1 | Thale cress | cytosol | 86.13 | 86.76 |
| Bra014808.1-P | Field mustard | mitochondrion | 85.4 | 86.03 |
| Bra000097.1-P | Field mustard | mitochondrion | 83.94 | 85.82 |
| CDY14429 | Canola | plastid | 83.94 | 85.82 |
| CDY07697 | Canola | mitochondrion | 83.94 | 85.82 |
| CDY57201 | Canola | nucleus | 75.91 | 85.25 |
| Zm00001d009350_P001 | Maize | cytosol | 71.53 | 85.22 |
| CDY07535 | Canola | nucleus | 85.4 | 84.78 |
| CDX67603 | Canola | nucleus | 85.4 | 84.78 |
| Bra003188.1-P | Field mustard | nucleus | 85.4 | 84.78 |
| CDX78246 | Canola | cytosol | 83.94 | 84.56 |
| Bra007080.1-P | Field mustard | cytosol | 83.94 | 84.56 |
| Zm00001d009769_P001 | Maize | cytosol, extracellular, nucleus | 69.34 | 81.9 |
| Zm00001d033146_P001 | Maize | cytosol | 69.34 | 81.9 |
| Zm00001d027775_P001 | Maize | cytosol, extracellular, mitochondrion, nucleus | 69.34 | 81.9 |
| Zm00001d007567_P001 | Maize | nucleus | 71.53 | 74.24 |
| CDY13216 | Canola | mitochondrion | 85.4 | 62.57 |
| Solyc06g084090.2.1 | Tomato | nucleus | 90.51 | 61.08 |
| Zm00001d025335_P001 | Maize | cytosol | 59.12 | 56.64 |
| CDX73471 | Canola | plastid | 83.94 | 55.29 |
| GSMUA_Achr6P23340_001 | Banana | mitochondrion | 89.78 | 53.48 |
| Zm00001d007553_P001 | Maize | nucleus | 70.8 | 51.05 |
| Zm00001d052588_P001 | Maize | cytosol, nucleus, plastid | 71.53 | 49.75 |
| Zm00001d011011_P001 | Maize | cytosol, nucleus, peroxisome | 73.72 | 32.79 |
| Zm00001d015078_P001 | Maize | endoplasmic reticulum, vacuole | 51.09 | 31.53 |
| Zm00001d031574_P001 | Maize | endoplasmic reticulum | 66.42 | 23.45 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:100216551 | EntrezGene:100216638 | MapMan:12.1.2 | ProteinID:AQK63045.1 | ProteinID:AQK63048.1 |
| UniProt:B4FH55 | EMBL:BT036443 | EMBL:BT037093 | EMBL:BT061784 | EMBL:EU959276 | GO:GO:0000786 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold |
| InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C | InterPro:Histone_H2A_CS | InterPro:IPR009072 | ProteinID:ONM09072.1 |
| ProteinID:ONM09073.1 | PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 | ScanProsite:PS00046 | PANTHER:PTHR23430 |
| PANTHER:PTHR23430:SF105 | SMART:SM00414 | SUPFAM:SSF47113 | UniParc:UPI00017B71EB | EnsemblPlantsGene:Zm00001d033979 | EnsemblPlants:Zm00001d033979_P001 |
| EnsemblPlants:Zm00001d033979_T001 | SEG:seg | : | : | : | : |
Description
Histone H2A
Coordinates
chr1:+:279975979..279978430
Molecular Weight (calculated)
14473.7 Da
IEP (calculated)
11.120
GRAVY (calculated)
-0.348
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKGGKGLL AAKTTAAKSA EKDKGKKAPI SRSSRAGLQF PVGRIHRQLK QRTQANGRVG ATAAVYSAAI LEYLTAEVLE LAGNASKDLK VKRITPRHLQ
101: LAIRGDEELD TLIKGTIAGG GVIPHIHKSL INKSSKE
101: LAIRGDEELD TLIKGTIAGG GVIPHIHKSL INKSSKE
001: MAGKGGKGLV AAKTMAANKD KDKDKKKPIS RSARAGIQFP VGRIHRQLKT RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLI NKTTKE
Arabidopsis Description
H2AVHistone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.