Factsheet for Zm00001d035012_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007553_P001
Zm00001d007567_P001
Zm00001d013300_P001
Zm00001d027760_P001
Zm00001d033979_P001
Zm00001d052325_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36740.1	Zm00001d007553_P001	AT3G54560.1	17470967
AT2G36740.1	Zm00001d007567_P001	AT3G54560.1	17470967
AT2G36740.1	Zm00001d013300_P001	AT3G54560.1	17470967
AT2G36740.1	Zm00001d027760_P001	AT3G54560.1	17470967
AT2G36740.1	Zm00001d033979_P001	AT3G54560.1	17470967
AT2G36740.1	Zm00001d052325_P001	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14361	Sorghum	nucleus	89.34	90.83
Os08t0192400-00	Rice	nucleus	75.96	77.01
TraesCS7D01G324500.1	Wheat	nucleus	75.14	75.14
TraesCS7A01G327700.1	Wheat	nucleus	74.59	74.59
TraesCS7B01G228400.1	Wheat	nucleus	71.58	71.58
HORVU7Hr1G078440.9	Barley	nucleus	74.04	67.08
GSMUA_AchrUn_...	Banana	nucleus	49.18	66.42
VIT_16s0039g02650.t01	Wine grape	nucleus	51.64	62.79
KRH58568	Soybean	nucleus	54.64	56.34
Solyc04g009830.2.1	Tomato	nucleus	54.1	55.0
CDY33188	Canola	nucleus	54.64	54.95
CDX75016	Canola	nucleus	54.64	54.64
AT2G36740.1	Thale cress	nucleus	53.55	53.7
PGSC0003DMT400065423	Potato	nucleus	53.01	51.05

Protein Annotations

MapMan:12.4.4.2	UniProt:A0A1D6LDL5	ProteinID:AQK78093.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006338	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0043486	PFAM:PF05764
PFAM:PF08265	PANTHER:PTHR13275	SMART:SM00993	UniParc:UPI0008454B56	InterPro:Vps72/YL1	InterPro:Vps72/YL1_C
EnsemblPlantsGene:Zm00001d035012	EnsemblPlants:Zm00001d035012_P002	EnsemblPlants:Zm00001d035012_T002	SEG:seg	:	:

Description

Vacuolar protein sorting protein 72

Coordinates

chr6:+:1757035..1760133

Molecular Weight (calculated)

41496.2 Da

IEP (calculated)

5.370

GRAVY (calculated)

-0.901

Length

366 amino acids

Sequence
(BLAST)

001: MDAGDDEPPV LLDRAARASR GKRITKLLED EVEQDEAFWN QEALKDEEND DNYVEEPDAG DEFDSDFGED ISSCERLLLI PLPCPSQLSN RLPIKKRLMF
101: PGKTLRKTNV KKKKATPKPE DGTKADKSAD KPSSSTQADL PDELEAEKAI RKSTRTSVIV RQAEREAIRA EKEATAKPIK RKKEGEEKRM TQEEMLLEAA
201: ETEIMNMRNL ERVLAREEEV KKKAVVHKDT YEGPTIRFFS RDGESRLEFI NGASFGSELC TTSSPYPEKP VCVVTGLPAK YRDPKTGLPY ATMEAFKIIR
301: ESFLKEEADR KRPNMSNMGE LFESITGGHL MPKKRRVEIR SPNMLGGSRH GGRTWRIPAF DMVDED

Best Arabidopsis Sequence Match ( AT2G36740.1 )
(BLAST)

001: MEIDEEEPMV FLDRTTRATR GKRMTKLLDD EVEEDEQFWN QEALKEEEHD DEYEAEREVA DEFDSDFNDD EPEPDAVAVN EKELRDLPKK RLIYPGKTAS
101: KKKKKKTKVV SQLEYIPGDE KPGEELGNKE QEEKEENEAQ EDMEGEKVIR KSTRTSVVVR QAERDALRAA IQATTKPIQR KKVGEEKRMT QEEMLLEAAQ
201: TEIMNLRNLE RVLAREEEVK KKAIVHKAVY KGPQIRYHSK DGCNYLEFCN GASFNSELST KSVPYPEKAV CVITGLPAKY RDPKTGLPYA TRDAFKAIRE
301: RFMDEHDGLR KKMEMGDLFD TLVAKGFATK QKRTKIPKSN KSFSLRSSAR FLSSESEEES EEDSD

Arabidopsis Description

SWC2SWR1 complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IP06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.