Factsheet for VIT_16s0039g02650.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0179g00340.t01
VIT_04s0008g04700.t01
VIT_08s0007g08060.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36740.1	VIT_04s0008g04700.t01	AT1G52740.1	17470967
AT2G36740.1	VIT_00s0179g00340.t01	AT3G54560.1	17470967
AT2G36740.1	VIT_08s0007g08060.t01	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	65.12	72.32
Solyc04g009830.2.1	Tomato	nucleus	70.76	59.17
AT2G36740.1	Thale cress	nucleus	69.44	57.26
KRH58568	Soybean	nucleus	66.78	56.62
PGSC0003DMT400065423	Potato	nucleus	71.1	56.32
CDY33188	Canola	nucleus	67.44	55.77
CDX75016	Canola	nucleus	67.77	55.74
Os08t0192400-00	Rice	nucleus	65.78	54.85
EES14361	Sorghum	nucleus	65.12	54.44
TraesCS7D01G324500.1	Wheat	nucleus	62.79	51.64
Zm00001d035012_P002	Maize	nucleus	62.79	51.64
TraesCS7A01G327700.1	Wheat	nucleus	62.46	51.37
TraesCS7B01G228400.1	Wheat	nucleus	59.8	49.18
HORVU7Hr1G078440.9	Barley	nucleus	62.46	46.53

Protein Annotations

EntrezGene:100258083	wikigene:100258083	MapMan:12.4.4.2	ProteinID:CCB50625	ProteinID:CCB50625.1	ncoils:Coil
UniProt:F6HEH9	EMBL:FN595750	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006338	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0043486	EntrezGene:LOC100258083	wikigene:LOC100258083	PFAM:PF05764
PFAM:PF08265	PANTHER:PTHR13275	SMART:SM00993	UniParc:UPI00021095FE	ArrayExpress:VIT_16s0039g02650	EnsemblPlantsGene:VIT_16s0039g02650
EnsemblPlants:VIT_16s0039g02650.t01	InterPro:Vps72/YL1	InterPro:Vps72/YL1_C	RefSeq:XP_002275587	RefSeq:XP_002275587.1	RefSeq:XP_010662153.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr16:-:2992510..3012003

Molecular Weight (calculated)

34705.8 Da

IEP (calculated)

5.039

GRAVY (calculated)

-1.035

Length

301 amino acids

Sequence
(BLAST)

001: METSKAEEPV VLDRASRITR GKRMNKLLDE EVEQDDYFWN QDALKEEEND VNYEEEAEVA DEFDSDFDED EPEPDEEVEN DADDRPRTKK RLSYPGKTLA
101: KKKKKKVLSN LERVTKDEKT SPESTVPENN EVPDDLEVER IVRKSTRTSV IVRQAERDAI RAALQATMKP IKRKKEGEEK KMTQEEMLLE AAQTEIINLR
201: NLERVLAREE EVKKRAIVHK SVYSGPQIRY SSKNGCSYLE FSKGLSFQSE LSATSVPYPE KAVCAVTGLP AKYRDPKTGL PYATKEAFRI IRERIRIKEK
301: G

Best Arabidopsis Sequence Match ( AT2G36740.1 )
(BLAST)

001: MEIDEEEPMV FLDRTTRATR GKRMTKLLDD EVEEDEQFWN QEALKEEEHD DEYEAEREVA DEFDSDFNDD EPEPDAVAVN EKELRDLPKK RLIYPGKTAS
101: KKKKKKTKVV SQLEYIPGDE KPGEELGNKE QEEKEENEAQ EDMEGEKVIR KSTRTSVVVR QAERDALRAA IQATTKPIQR KKVGEEKRMT QEEMLLEAAQ
201: TEIMNLRNLE RVLAREEEVK KKAIVHKAVY KGPQIRYHSK DGCNYLEFCN GASFNSELST KSVPYPEKAV CVITGLPAKY RDPKTGLPYA TRDAFKAIRE
301: RFMDEHDGLR KKMEMGDLFD TLVAKGFATK QKRTKIPKSN KSFSLRSSAR FLSSESEEES EEDSD

Arabidopsis Description

SWC2SWR1 complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IP06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.