Factsheet for VIT_04s0008g04700.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g06370.t01
VIT_16s0039g02650.t01
VIT_18s0072g01030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52740.1	VIT_18s0072g01030.t01	AT1G35670.1	19130088
AT1G52740.1	VIT_16s0039g02650.t01	AT2G36740.1	17470967
AT1G52740.1	VIT_08s0007g06370.t01	AT3G12810.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63015	Soybean	nucleus	94.78	94.78
KRH54863	Soybean	nucleus	94.78	94.07
Solyc12g006830.1.1	Tomato	nucleus	90.3	89.63
PGSC0003DMT400002745	Potato	nucleus	90.3	89.63
CDY21851	Canola	nucleus	89.55	89.55
AT1G52740.1	Thale cress	nucleus	88.81	88.81
GSMUA_Achr10P...	Banana	nucleus	89.55	88.24
Bra018984.1-P	Field mustard	nucleus	87.31	86.67
Bra030365.1-P	Field mustard	nucleus	87.31	86.67
CDY40131	Canola	nucleus	87.31	86.67
CDY47568	Canola	nucleus	87.31	86.67
CDY61820	Canola	nucleus	87.31	86.67
CDY62197	Canola	nucleus	87.31	86.67
CDY62164	Canola	nucleus	79.85	85.6
VIT_00s0179g00340.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	82.84	83.46
VIT_09s0002g05770.t01	Wine grape	endoplasmic reticulum, extracellular	73.88	77.95
CDY21852	Canola	nucleus	81.34	52.91

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100249276	wikigene:100249276	EntrezGene:100265256	wikigene:100265256	MapMan:12.1.2
EMBL:AM428790	ProteinID:CAN64650	ProteinID:CAN64650.1	ProteinID:CBI20969	ProteinID:CBI20969.3	UniProt:D7SUM0
EMBL:FN595231	GO:GO:0000786	GO:GO:0000790	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0005737	GO:GO:0005773	GO:GO:0006139	GO:GO:0006342	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009266	GO:GO:0009605	GO:GO:0009607
GO:GO:0009628	GO:GO:0009987	GO:GO:0016043	GO:GO:0040029	GO:GO:0042742	GO:GO:0046982
InterPro:Histone-fold	InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2A_C	InterPro:Histone_H2A_CS	InterPro:IPR009072
EntrezGene:LOC100249276	wikigene:LOC100249276	EntrezGene:LOC100265256	wikigene:LOC100265256	PFAM:PF00125	PFAM:PF16211
PRINTS:PR00620	ScanProsite:PS00046	PANTHER:PTHR23430	PANTHER:PTHR23430:SF105	SMART:SM00414	SUPFAM:SSF47113
TIGR:TC53075	UniParc:UPI00015C8F6B	ArrayExpress:VIT_04s0008g04700	EnsemblPlantsGene:VIT_04s0008g04700	EnsemblPlants:VIT_04s0008g04700.t01	unigene:Vvi.11998
unigene:Vvi.7299	RefSeq:XP_002284738	RefSeq:XP_002284738.1	RefSeq:XP_002285266	RefSeq:XP_002285266.1	:

Description

Histone H2A [Source:UniProtKB/TrEMBL;Acc:D7SUM0]

Coordinates

chr4:+:4149604..4155695

Molecular Weight (calculated)

14274.6 Da

IEP (calculated)

11.120

GRAVY (calculated)

-0.276

Length

134 amino acids

Sequence
(BLAST)

001: MSGKGAKGLI MGKSPALNKD KDKKKPVSRS SRAGLQFPVG RIHRLLKSRV TANGRVGATA AVYSAAILEY LTAEVLELAG NASKDLKVKR ITPRHLQLAI
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SSKD

Best Arabidopsis Sequence Match ( AT1G52740.1 )
(BLAST)

001: MSGKGAKGLI MGKPSGSDKD KDKKKPITRS SRAGLQFPVG RVHRLLKTRS TAHGRVGATA AVYTAAILEY LTAEVLELAG NASKDLKVKR ISPRHLQLAI
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SAKE

Arabidopsis Description

HTA9Probable histone H2A variant 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C944]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.