Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- endoplasmic reticulum 1
- mitochondrion 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002331 | |
| PGSC0003DMT400065423 | |
| PGSC0003DMT400067082 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G52740.1 | PGSC0003DMT400002331 | AT1G35670.1 | 19130088 |
| AT1G52740.1 | PGSC0003DMT400067082 | AT1G35670.1 | 19130088 |
| AT1G52740.1 | PGSC0003DMT400065423 | AT2G36740.1 | 17470967 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g006830.1.1 | Tomato | nucleus | 100.0 | 100.0 |
| KRH63015 | Soybean | nucleus | 91.11 | 91.79 |
| KRH54863 | Soybean | nucleus | 91.11 | 91.11 |
| VIT_04s0008g04700.t01 | Wine grape | nucleus | 89.63 | 90.3 |
| CDY21851 | Canola | nucleus | 87.41 | 88.06 |
| AT1G52740.1 | Thale cress | nucleus | 86.67 | 87.31 |
| PGSC0003DMT400051893 | Potato | extracellular | 86.67 | 85.4 |
| Bra018984.1-P | Field mustard | nucleus | 85.19 | 85.19 |
| CDY62197 | Canola | nucleus | 85.19 | 85.19 |
| CDY61820 | Canola | nucleus | 85.19 | 85.19 |
| CDY47568 | Canola | nucleus | 85.19 | 85.19 |
| CDY40131 | Canola | nucleus | 85.19 | 85.19 |
| Bra030365.1-P | Field mustard | nucleus | 85.19 | 85.19 |
| PGSC0003DMT400049686 | Potato | nucleus | 86.67 | 84.17 |
| CDY62164 | Canola | nucleus | 77.78 | 84.0 |
| GSMUA_Achr10P... | Banana | nucleus | 84.44 | 83.82 |
| CDY21852 | Canola | nucleus | 78.52 | 51.46 |
| PGSC0003DMT400089480 | Potato | nucleus | 47.41 | 47.06 |
| PGSC0003DMT400094846 | Potato | mitochondrion, nucleus | 45.93 | 45.59 |
| PGSC0003DMT400091186 | Potato | mitochondrion | 44.44 | 44.12 |
| PGSC0003DMT400087364 | Potato | mitochondrion | 43.7 | 43.38 |
| PGSC0003DMT400095704 | Potato | mitochondrion | 42.22 | 41.61 |
| PGSC0003DMT400090970 | Potato | nucleus | 37.04 | 37.31 |
| PGSC0003DMT400088887 | Potato | endoplasmic reticulum, extracellular | 31.11 | 35.29 |
| PGSC0003DMT400094421 | Potato | endoplasmic reticulum, mitochondrion | 33.33 | 35.16 |
| PGSC0003DMT400086553 | Potato | endoplasmic reticulum, extracellular | 31.11 | 33.87 |
| PGSC0003DMT400094311 | Potato | extracellular | 28.15 | 32.76 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:102581303 | MapMan:12.1.2 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005694 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 |
| InterPro:Histone_H2A_C | InterPro:Histone_H2A_CS | InterPro:IPR009072 | UniProt:M0ZKK1 | PFAM:PF00125 | PFAM:PF16211 |
| EnsemblPlantsGene:PGSC0003DMG400001065 | PGSC:PGSC0003DMG400001065 | EnsemblPlants:PGSC0003DMT400002745 | PRINTS:PR00620 | ScanProsite:PS00046 | PANTHER:PTHR23430 |
| PANTHER:PTHR23430:SF105 | SMART:SM00414 | SUPFAM:SSF47113 | UniParc:UPI000276A962 | RefSeq:XP_006366860.1 | SEG:seg |
Description
Histone H2A [Source:PGSC_GENE;Acc:PGSC0003DMG400001065]
Coordinates
chr12:+:5010917..5014465
Molecular Weight (calculated)
14493.7 Da
IEP (calculated)
10.955
GRAVY (calculated)
-0.444
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGKGAKGLI MGKTAANKDK EKEKKKPTSR SSRAGLQFPV GRIHRLLKER TNANGRVGAT AAVYSAAILE YLTAEVLELA GNASKDLKVK RITPRHLQLA
101: IRGDEELDTL IKGTIAGGGV IPHIHKSLIN KSSKE
101: IRGDEELDTL IKGTIAGGGV IPHIHKSLIN KSSKE
001: MSGKGAKGLI MGKPSGSDKD KDKKKPITRS SRAGLQFPVG RVHRLLKTRS TAHGRVGATA AVYTAAILEY LTAEVLELAG NASKDLKVKR ISPRHLQLAI
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SAKE
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SAKE
Arabidopsis Description
HTA9Probable histone H2A variant 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C944]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.