Factsheet for PGSC0003DMT400090970

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g014880.1.1	Tomato	nucleus	44.78	68.18
PGSC0003DMT400095704	Potato	mitochondrion	67.91	66.42
PGSC0003DMT400089480	Potato	nucleus	67.16	66.18
PGSC0003DMT400094846	Potato	mitochondrion, nucleus	64.18	63.24
PGSC0003DMT400091186	Potato	mitochondrion	64.18	63.24
PGSC0003DMT400087364	Potato	mitochondrion	56.72	55.88
HORVU2Hr1G043840.1	Barley	mitochondrion	28.36	52.78
PGSC0003DMT400094421	Potato	endoplasmic reticulum, mitochondrion	45.52	47.66
TraesCS2B01G239700.1	Wheat	mitochondrion	47.76	47.41
TraesCS2A01G214700.1	Wheat	mitochondrion	47.76	47.41
KRH27119	Soybean	nucleus	47.76	47.41
HORVU2Hr1G043860.1	Barley	nucleus	47.76	47.41
Bra029498.1-P	Field mustard	mitochondrion	41.79	46.67
Solyc05g014850.1.1	Tomato	cytosol, nucleus, peroxisome, plastid	60.45	46.29
CDY23443	Canola	mitochondrion	41.04	45.83
PGSC0003DMT400088887	Potato	endoplasmic reticulum, extracellular	38.81	43.7
PGSC0003DMT400086553	Potato	endoplasmic reticulum, extracellular	39.55	42.74
PGSC0003DMT400094311	Potato	extracellular	36.57	42.24
GSMUA_Achr2P01530_001	Banana	endoplasmic reticulum, plasma membrane	32.84	41.51
CDY11491	Canola	mitochondrion	24.63	38.37
PGSC0003DMT400002745	Potato	nucleus	37.31	37.04
PGSC0003DMT400051893	Potato	extracellular	37.31	36.5
PGSC0003DMT400049686	Potato	nucleus	36.57	35.25
HORVU6Hr1G003750.1	Barley	nucleus	24.63	25.78

Protein Annotations

Gene3D:1.10.20.10	MapMan:12.1.2	GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0016020	GO:GO:0016021	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A
InterPro:Histone_H2A_C	InterPro:Histone_H2A_CS	InterPro:IPR009072	UniProt:M1DLL6	PFAM:PF16211	EnsemblPlantsGene:PGSC0003DMG400040541
PGSC:PGSC0003DMG400040541	EnsemblPlants:PGSC0003DMT400090970	PRINTS:PR00620	ScanProsite:PS00046	PANTHER:PTHR23430	PANTHER:PTHR23430:SF141
SMART:SM00414	SUPFAM:SSF47113	TMHMM:TMhelix	UniParc:UPI00029667E3	:	:

Description

Histone H2A [Source:PGSC_GENE;Acc:PGSC0003DMG400040541]

Coordinates

chr5:-:12545876..12546402

Molecular Weight (calculated)

14719.0 Da

IEP (calculated)

10.763

GRAVY (calculated)

-0.204

Length

134 amino acids

Sequence
(BLAST)

001: MAGKGENLGS WKNLGSNAKR RSHSSKAGLQ FPVACIARFL KVGKYAKRVS AGAPIFLAVV LEYLAVERGM KKKTQIIPRH IQLAIRFDKE LNQFLRDVAI
101: PNGGVIPIIH NIFLPNNKSN TSKAVADAAH EEED

Best Arabidopsis Sequence Match ( AT4G27230.1 )
(BLAST)

001: MAGRGKQLGS GAAKKSTSRS SKAGLQFPVG RIARFLKAGK YAERVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHNLLLPK KAGSSKPTEE D

Arabidopsis Description

HTA2Probable histone H2A.3 [Source:UniProtKB/Swiss-Prot;Acc:O81826]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.